BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1825.p
         (167 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095279|ref|YP_001100354.1| riboflavin synthase subunit bet...   230   3e-62
gi|134094269|ref|YP_001099344.1| 6,7-dimethyl-8-ribityllumazine ...    55   2e-09

>gi|134095279|ref|YP_001100354.1| riboflavin synthase subunit beta
           [Herminiimonas arsenicoxydans]
          Length = 167

 Score =  230 bits (587), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 106/147 (72%), Positives = 125/147 (85%)

Query: 14  AQRIAFVQASWHKDIVDQCRIGFTEEMAKLGWPASSIDFFELPGAFEIPLHAKVLAKTGK 73
           A+RIAF+QASWHK+IVDQCRI F EEMA  G+ A  IDFFE+ GAFEIPLHAKVLAK+G+
Sbjct: 13  ARRIAFIQASWHKEIVDQCRIAFVEEMAARGYSADVIDFFEVAGAFEIPLHAKVLAKSGR 72

Query: 74  YAGIVASGLVVDGGIYRHDFVAQSVISALMQVQLETEVPVFSAVLTPHHFHAHSEHHDYF 133
           YA IV +GLVVDGG+YRH+FV+Q+VIS LMQVQLETEVPV SAVLTPHHFH+H EH  +F
Sbjct: 73  YAAIVGTGLVVDGGVYRHEFVSQAVISGLMQVQLETEVPVISAVLTPHHFHSHDEHQGFF 132

Query: 134 HAHFLVKGREAAQACASTVAKLAEVRA 160
             HFLVKG+EAA ACA T+ +L ++ A
Sbjct: 133 FQHFLVKGKEAAHACADTIQRLQQIDA 159


>gi|134094269|ref|YP_001099344.1| 6,7-dimethyl-8-ribityllumazine
           synthase [Herminiimonas arsenicoxydans]
          Length = 166

 Score = 55.1 bits (131), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 55/104 (52%)

Query: 16  RIAFVQASWHKDIVDQCRIGFTEEMAKLGWPASSIDFFELPGAFEIPLHAKVLAKTGKYA 75
           RI  VQA +++D+          E+  LG     I    +PGA EIPL  + +A+T ++ 
Sbjct: 16  RIGIVQARFNQDVCHGLLSACLAELKHLGVVDEDILHVTVPGALEIPLALRKMAETLQFD 75

Query: 76  GIVASGLVVDGGIYRHDFVAQSVISALMQVQLETEVPVFSAVLT 119
            ++A G V+ G  Y  + V+    + + +V L+  +P+ +AVLT
Sbjct: 76  ALIAIGAVIRGETYHFELVSNESGAGITRVGLDFGLPIANAVLT 119


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.323    0.132    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 304,066
Number of extensions: 11439
Number of successful extensions: 48
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 48
Number of HSP's successfully gapped: 2
Length of query: 167
Length of database: 1,000,347
Length adjustment: 75
Effective length of query: 92
Effective length of database: 753,222
Effective search space: 69296424
Effective search space used: 69296424
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 125 (52.8 bits)