BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1823.p
         (292 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095364|ref|YP_001100439.1| heat shock protein HtpX [Hermin...   385   e-109
gi|134093469|ref|YP_001098544.1| putative zinc dependent peptida...    95   3e-21

>gi|134095364|ref|YP_001100439.1| heat shock protein HtpX
           [Herminiimonas arsenicoxydans]
          Length = 293

 Score =  385 bits (990), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 188/291 (64%), Positives = 235/291 (80%), Gaps = 1/291 (0%)

Query: 1   MKRIVLFLVTNLAVMLVLSFTASLLGVNRYLTANGLNLGMLLVFCGLMGFGGSFISLFMS 60
           MKRI LF+ TN+AV+ V+S   SLLGV+R+++  GLNL MLLVF  ++GF G+ ISL +S
Sbjct: 1   MKRIFLFVATNIAVIAVMSIVLSLLGVDRFISQAGLNLPMLLVFSLVVGFTGAIISLLIS 60

Query: 61  KTIAKWSTGARVIEQPQNSTELWLLQTVQTLAARAQLPMPEVAVYDGEPNAFATGASKNN 120
           K +AKWSTGARVI  P +STELWL+ +V+ L+ RA + MPEVAVYDGEPNAFATGA KN+
Sbjct: 61  KPMAKWSTGARVITAPSSSTELWLIDSVRKLSERAGIAMPEVAVYDGEPNAFATGAFKNS 120

Query: 121 SLVAVSTGLLQSMTKDEVEAVLAHEVAHIANGDMVTLTLIQGVVNTFVMFFARIVGYFVD 180
           +LVAVSTGLLQSMTK+EVEAVLAHEVAH+ANGDMVT+TL+QGVVNTFV+F AR+VGYFVD
Sbjct: 121 ALVAVSTGLLQSMTKEEVEAVLAHEVAHVANGDMVTMTLVQGVVNTFVVFLARVVGYFVD 180

Query: 181 SFL-RRNNEENSGPGIAYMATVFVCEIVFGILASIIVMYFSRQREYRADAGAASLMGSRT 239
             L  R++  N G GI Y  TV VC++VFGI AS+IV +FSR RE+RADAGAA+L+GS  
Sbjct: 181 RALSSRDSNNNGGQGIGYTITVLVCQVVFGIAASVIVAWFSRHREFRADAGAATLLGSPQ 240

Query: 240 PMINALRRLGGLQADGLPQNLQASGISGRQSWLGLFSSHPPLESRIAALQS 290
           PM+ AL RLGG+  + LP+ + + GI+ +  +  LFSSHPP+E RIAAL+S
Sbjct: 241 PMMKALARLGGIAPNSLPEGMASMGINDKPGFAALFSSHPPIEQRIAALRS 291


>gi|134093469|ref|YP_001098544.1| putative zinc dependent peptidase
           [Herminiimonas arsenicoxydans]
          Length = 633

 Score = 95.1 bits (235), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 86/266 (32%), Positives = 126/266 (47%), Gaps = 25/266 (9%)

Query: 42  LVFCGLMGFGGSFISLFMSK----TIAKWSTGARVIEQPQNSTELWLLQTVQTLAARAQL 97
           LV  GL+  GG+ I LF  +     +A+ + G  V     +  E  LL  V+ +A  + +
Sbjct: 46  LVTLGLIA-GGTMIELFNLRDGGDAVARMAGGTVVAPNTADVRERRLLNVVEEMALASGI 104

Query: 98  PMPEVAVYDGEP--NAFATGASKNNSLVAVSTGLLQSMTKDEVEAVLAHEVAHIANGDMV 155
             P V V   E   NAFA G + N +++AV+ G L  +T+DE++ V+ HE +HI NGDM 
Sbjct: 105 ACPSVYVLARETSINAFAAGYNANEAVIAVTQGALTRLTRDELQGVIGHEFSHILNGDMR 164

Query: 156 TLTLIQGVVNTFVMF--FARIVGYFVDSFLRRNNEENSGPGIA-YMA------TVFVCEI 206
               + GV+    M   F R +  F   +   +  E +G G   +MA      T+FV   
Sbjct: 165 LNVRLIGVLFGIQMIAGFGRHLMSF--GWQTVDAGERNGKGTPLHMAIWVVGGTLFVIGY 222

Query: 207 VFGILASIIVMYFSRQREYRADAGAASLMGSRTPMINALRRLGGLQADG-------LPQN 259
           V      +I    SRQRE+ ADA A     +   + NALR++GGL   G        P  
Sbjct: 223 VGIFFGRVIKSALSRQREFLADASAIQFTRNPDGLGNALRKIGGLTRRGGADAQIRHPNA 282

Query: 260 LQASGISGRQSWLGLFSSHPPLESRI 285
            Q S +       GL ++HPPL  R+
Sbjct: 283 EQLSHLFLNAVRPGLLATHPPLRERL 308


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.323    0.135    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 524,583
Number of extensions: 20603
Number of successful extensions: 86
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 83
Number of HSP's successfully gapped: 2
Length of query: 292
Length of database: 1,000,347
Length adjustment: 81
Effective length of query: 211
Effective length of database: 733,452
Effective search space: 154758372
Effective search space used: 154758372
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 128 (53.9 bits)