BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1821.p (323 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095859|ref|YP_001100934.1| hypothetical protein HEAR2691 [... 132 3e-32 gi|134095595|ref|YP_001100670.1| hypothetical protein HEAR2418 [... 121 4e-29 gi|134094940|ref|YP_001100015.1| GGDEF domain-containing protein... 120 7e-29 gi|134096058|ref|YP_001101133.1| hypothetical protein HEAR2898 [... 120 9e-29 gi|134093839|ref|YP_001098914.1| hypothetical protein HEAR0586 [... 111 4e-26 >gi|134095859|ref|YP_001100934.1| hypothetical protein HEAR2691 [Herminiimonas arsenicoxydans] Length = 280 Score = 132 bits (331), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 78/203 (38%), Positives = 107/203 (52%), Gaps = 1/203 (0%) Query: 122 NHDGERLCLIQ-ISDASNSVRREKMLRSHSEALKRQAGTDGLTGIHNRRHFDEHYAQALQ 180 N DGE LI + D S + E L + L+ + DGLTG+ NRR FD A Sbjct: 78 NADGEVEALIGFMFDISERKKTEAKLIDLQKELETLSFKDGLTGVANRRMFDSIMAAEWA 137 Query: 181 RAREQAGTLSLFMIDVDFFKQYNDHYGHGAGDHVLKGVAAALRGQLRQPGDLLARYGGEE 240 A+ LS+ M+D+D+FKQYNDHYGH GD LK VA L R+ D AR+GGEE Sbjct: 138 NAKLNHQPLSVIMLDIDYFKQYNDHYGHIQGDDCLKRVANILSSATRRSRDFFARFGGEE 197 Query: 241 FILLMQDLTHEQAAELGQALRQAVYQLDEPHAKSLVEHRVTISVGVCTRVVQEDEDGRLL 300 FIL++ + A + + R + + PH KS V +T+S+GV T + + +D Sbjct: 198 FILVLPETDELNAINIAERCRTLICKEKIPHEKSEVIPMITVSLGVGTVIPTDKDDPIRF 257 Query: 301 MAAADAALYRAKLGGRNKVVAID 323 + D LY+AK GRN + D Sbjct: 258 IEEVDKRLYQAKQRGRNCIANSD 280 >gi|134095595|ref|YP_001100670.1| hypothetical protein HEAR2418 [Herminiimonas arsenicoxydans] Length = 313 Score = 121 bits (304), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 71/185 (38%), Positives = 109/185 (58%), Gaps = 2/185 (1%) Query: 140 VRREK-MLRSHSEALKRQAGTDGLTGIHNRRHFDEHYAQALQRAREQAGTLSLFMIDVDF 198 +R+E+ +L E L++ D LTGI++R++F++ + + +L + IDVD+ Sbjct: 129 LRKERRLLERDKENLEQLVVHDTLTGIYSRKYFEDQLRTRWDQLIDTQESLVMMFIDVDY 188 Query: 199 FKQYNDHYGHGAGDHVLKGVAAALRGQLRQPGDLLARYGGEEFILLMQDLTHEQAAELGQ 258 FK +ND YGH AGD L+ VA+ L LR+ + +AR+GGEEFI+L ++T EQA + Sbjct: 189 FKGFNDTYGHIAGDDALRKVASILDDSLRRDSEFVARFGGEEFIVLATEMTAEQAIMHAE 248 Query: 259 ALRQAVYQLDEPHAKSLVEHRVTISVGVCTRVVQEDEDGRLLMAAADAALYRAKLGGRNK 318 L ++V LD PHA S +TIS GV +L+ AD+ALY+AK GRN+ Sbjct: 249 NLCRSVRDLDIPHAAS-PHQFLTISCGVVRMKPSSMAQPEVLLEQADSALYQAKARGRNQ 307 Query: 319 VVAID 323 V + + Sbjct: 308 VASCE 312 >gi|134094940|ref|YP_001100015.1| GGDEF domain-containing protein [Herminiimonas arsenicoxydans] Length = 519 Score = 120 bits (302), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 72/186 (38%), Positives = 106/186 (56%), Gaps = 9/186 (4%) Query: 141 RREKMLRSHSEALKRQAG-------TDGLTGIHNRRHFDEHYAQALQRAREQAGTLSLFM 193 R + LR+ + L+R G D LTG+ NRR FD RA +L+L M Sbjct: 324 RAQSELRTARDDLERSNGELAALALLDSLTGLANRRRFDAALDDEFARAMRNQTSLALIM 383 Query: 194 IDVDFFKQYNDHYGHGAGDHVLKGVAAALRGQLRQPGDLLARYGGEEFILLMQDLTHEQA 253 +DVD FK+YND YGH GD LK ++ L+ + GDL+ARYGGEEF++L+ A Sbjct: 384 LDVDHFKKYNDRYGHPQGDECLKEISKILKTATARTGDLVARYGGEEFVILLPGTDRAGA 443 Query: 254 AELGQALRQAVYQLDEPHAKSLVEHRVTISVGVCTRVVQEDEDG-RLLMAAADAALYRAK 312 A + + +R A+ L+ HA++ + VT S+G+ + Q ++ + L+ AAD ALY+AK Sbjct: 444 AAVAERVRLAIQALNMEHAET-PDGIVTASLGIAALIPQRQQNSPQQLVHAADQALYKAK 502 Query: 313 LGGRNK 318 GRN+ Sbjct: 503 EDGRNQ 508 >gi|134096058|ref|YP_001101133.1| hypothetical protein HEAR2898 [Herminiimonas arsenicoxydans] Length = 314 Score = 120 bits (301), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 72/180 (40%), Positives = 108/180 (60%), Gaps = 9/180 (5%) Query: 149 HSEALKRQAGTDGLTGIHNRRHFDEHYAQALQRAREQAGTLSLFMIDVDFFKQYNDHYGH 208 ++E L+ TD LTG++NRR+ + + + R + TLS ID+DFFK+ ND+YGH Sbjct: 137 NNERLQHIGLTDPLTGVNNRRYVERRLLEEVGRTQRHGHTLSAMYIDLDFFKKVNDNYGH 196 Query: 209 GAGDHVLKGVAAALRGQLRQPGDLLARYGGEEFILLMQDLTHEQAAELGQALRQAVYQLD 268 GD VL+ VAA ++ +LR D L R+GGEEF++L+ D E A + + +R ++ + Sbjct: 197 QGGDEVLREVAARIKAELRL-SDALGRFGGEEFVVLLIDAGMEAALAVAERMRSSIA--N 253 Query: 269 EPHAKSLVEH-RVTISVGVCTRVVQEDED-----GRLLMAAADAALYRAKLGGRNKVVAI 322 P S E R+++S+GV T E +D + L+A AD ALY AK GGRNKV+ + Sbjct: 254 RPLVLSSGEQLRLSVSIGVSTLQAIERKDEVATIAQQLLAKADQALYLAKQGGRNKVMNV 313 >gi|134093839|ref|YP_001098914.1| hypothetical protein HEAR0586 [Herminiimonas arsenicoxydans] Length = 322 Score = 111 bits (278), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 73/189 (38%), Positives = 102/189 (53%), Gaps = 23/189 (12%) Query: 141 RREKMLRSHSEALKRQAGTDGLTGIHNRRHFDEHYAQALQRAREQAGTLSLFMIDVDFFK 200 RREK+ E ++ + DGLTG++NR ++ A+ ++ A LSL MID+D+FK Sbjct: 149 RREKV----GEFYRQLSMLDGLTGLYNRAWLNDKLAELVEEAHHAGRPLSLIMIDLDYFK 204 Query: 201 QYNDHYGHGAGDHVLKGVAAALRGQLRQPGDLLARYGGEEFILLMQDLTHEQ----AAEL 256 ++ND YGH GDH L+ A L LR P D RYGGEE +++ D A L Sbjct: 205 KFNDQYGHQMGDHALRVAAGVLNAALR-PSDFAVRYGGEELTVILPDSNATTGRMVAQRL 263 Query: 257 GQALRQAVYQLDE----PHAKSLVEHRVTISVGVCTRVVQEDEDGRLLMAAADAALYRAK 312 + +R+AV D PH +T S G+ T Q D++ L+ ADAALYRAK Sbjct: 264 CERMREAVVFEDMHVPLPH--------LTASFGIATLDAQHDQED--LVTRADAALYRAK 313 Query: 313 LGGRNKVVA 321 GRN++ A Sbjct: 314 EAGRNQISA 322 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.321 0.136 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 612,247 Number of extensions: 25864 Number of successful extensions: 168 Number of sequences better than 1.0e-08: 30 Number of HSP's gapped: 131 Number of HSP's successfully gapped: 30 Length of query: 323 Length of database: 1,000,347 Length adjustment: 82 Effective length of query: 241 Effective length of database: 730,157 Effective search space: 175967837 Effective search space used: 175967837 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)