BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1820.p
         (127 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094677|ref|YP_001099752.1| putative two-component sensor k...    64   2e-12

>gi|134094677|ref|YP_001099752.1| putative two-component sensor
           kinase (partial) [Herminiimonas arsenicoxydans]
          Length = 577

 Score = 63.9 bits (154), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/118 (36%), Positives = 64/118 (54%), Gaps = 4/118 (3%)

Query: 6   PGKTLLIVDDSKVSRMVIKAHVLAVHPDWQVSEAANGEEAIRQVQQGAPDFCTMDINMPG 65
           P +TLL+VDD  V R ++   ++ +   + V EAA+G E +  +Q  APD   +DI M G
Sbjct: 367 PARTLLVVDDQPVQRHMLTGMLIPL--GFNVREAASGNECLDLLQDFAPDAILLDIGMDG 424

Query: 66  MLGTDAAAQILQS-HPAVRIAIFSANVQEAVQTRAQQLGA-VFVAKPVTEKSIAQALR 121
           M G + A Q+  + H AV I   SA++ E    + +  G   FV KPV E  +  AL+
Sbjct: 425 MDGWETARQVRAAGHAAVPIIFISADLFENDPEKLRLAGCQAFVGKPVLESELMLALQ 482


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.318    0.129    0.369 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 216,142
Number of extensions: 7061
Number of successful extensions: 56
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 60
Number of HSP's successfully gapped: 2
Length of query: 127
Length of database: 1,000,347
Length adjustment: 72
Effective length of query: 55
Effective length of database: 763,107
Effective search space: 41970885
Effective search space used: 41970885
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 123 (52.0 bits)