BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1817.p (299 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095063|ref|YP_001100138.1| hypothetical protein HEAR1862 [... 94 6e-21 gi|134095694|ref|YP_001100769.1| putative regulator protein [Her... 91 6e-20 gi|134094860|ref|YP_001099935.1| putative transmembrane nitrate/... 73 2e-14 gi|134093849|ref|YP_001098924.1| hypothetical protein HEAR0597 [... 65 6e-12 >gi|134095063|ref|YP_001100138.1| hypothetical protein HEAR1862 [Herminiimonas arsenicoxydans] Length = 478 Score = 94.4 bits (233), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 72/252 (28%), Positives = 124/252 (49%), Gaps = 25/252 (9%) Query: 43 AVGLAGLLLNLSEHRV-------ADAKLRQLAQRVVHSQEEERARLSRDLHDGISQWLVS 95 V GL+ N++ R+ + A+L +L+ + +E+ER ++R++HD + L + Sbjct: 237 CVQWEGLMTNITASRLEQEEIIRSRAQLAELSAHIDIVKEQERTHIAREIHDDLGGNLTA 296 Query: 96 IKLQIEAALERLRGTPEQAAQARSGFEKTATQINGVLAEVRRISHDLRPALLDDLGLAAA 155 IK+ + RL P + + + + ++ + V RI+ +LRP +LD GL AA Sbjct: 297 IKMALALLTRRL---PRKNVELIEKADYVESLVDRTIESVHRIAGNLRPGILD-FGLVAA 352 Query: 156 LEHLCSEWRDSAGSGAGNTAAATQIVFESEGKLGDGTPLPEVVNTVLFRVAQEALTNIAR 215 ++ E+ G ++ T+I + T LFR+ QEALTNIA+ Sbjct: 353 IDWQGREFEKQVGIPCQFSSNKTEIDLALDQA------------TALFRIFQEALTNIAK 400 Query: 216 HAGASQIRMRLYGGSTLLMLQVQDNGCGFDLGRVDDHSRHGIGLRNMRERMEAVGGELAI 275 HA AS + ++L + L++ DNG G + D + G+R M ER A+GG L++ Sbjct: 401 HAKASLVTVQLVHTRQYVRLEIVDNGRGIQM--TDRNKPKSFGIRGMVERSIAMGGSLSV 458 Query: 276 DSSAAGTRISAI 287 ++ G I AI Sbjct: 459 STAPKGGTIVAI 470 >gi|134095694|ref|YP_001100769.1| putative regulator protein [Herminiimonas arsenicoxydans] Length = 700 Score = 91.3 bits (225), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 64/225 (28%), Positives = 110/225 (48%), Gaps = 27/225 (12%) Query: 73 SQEEERARLSRDLHDGISQWLVSIKLQIEAALERLRGTPEQAAQARSGFEKTATQINGVL 132 ++EEE+ ++R+LHD + L ++ + + +++ P+ F + + +I +L Sbjct: 483 TREEEKRAIARELHDDLGAALTALNMHLSLIFQQMPAEPK--------FTERSVKIKALL 534 Query: 133 AEV----RRISHDLRPALLDDLGLAAALEHLCSEWRDSAGSGAGNTAAATQIVFESEGKL 188 + + RRI + LRP LD G+ A+ +E+ G Q+ + + Sbjct: 535 SSITDATRRIQNGLRPDKLDVFGIKIAIAEQAAEFEKYTGVVCNVNLPDDQLTYAAR--- 591 Query: 189 GDGTPLPEVVNTVLFRVAQEALTNIARHAGASQIRMRLYGGSTLLMLQVQDNGCGFDLGR 248 V+ LFR+ QEAL NIA+HA AS + + L ++L V+DNG G L R Sbjct: 592 ---------VDIALFRIVQEALNNIAKHAKASHVDVVLDDTDDEIVLTVRDNGIGIPLSR 642 Query: 249 VDDHSRHGIGLRNMRERMEAVGGELAI-DSSAAGTRISAIIARSS 292 ++ H GLR MRER+ +GG + I + GT I I +++ Sbjct: 643 PNNMITH--GLRGMRERVAYLGGTVRIGGAEGKGTTIVVTIPKTA 685 >gi|134094860|ref|YP_001099935.1| putative transmembrane nitrate/nitrite sensor kinase transcription regulator protein [Herminiimonas arsenicoxydans] Length = 672 Score = 73.2 bits (178), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 61/222 (27%), Positives = 102/222 (45%), Gaps = 27/222 (12%) Query: 76 EERARLSRDLHDGISQWLVSIKLQIEA---ALE--RLRGTPEQAAQARSGFEKTATQING 130 EER +++ LHD I+Q L + LQ++ +L+ RL+ E R+G +N Sbjct: 467 EERNLVAQGLHDSIAQGLTFLNLQVQMLDDSLQKGRLKEVAEIVPALRAG-------VNE 519 Query: 131 VLAEVRRISHDLRPALLDDLGLAAALEHLCSEWRDSAGSGAGNTAAATQIVFESEGKLGD 190 ++R + + R L+ L +L+ ++R +G A+ GD Sbjct: 520 SYEDIRELLLNFRSRLIKG-DLINSLQTTIDKFRRQSGITVNFVAS------------GD 566 Query: 191 GTPLPEVVNTVLFRVAQEALTNIARHAGASQIRMRLYGGSTLLMLQVQDNGCGFDLGRVD 250 G PLP + + QEAL+NI +HA AS++ +RL L + DNG GFD + Sbjct: 567 GAPLPYEQQLQIMFIVQEALSNIRKHASASKVEIRLQDNQD-FSLSIHDNGGGFDADTLL 625 Query: 251 DHSRHGIGLRNMRERMEAVGGELAIDSSA-AGTRISAIIARS 291 +G+ MRER + + + S+ GT + +AR+ Sbjct: 626 SKGESHVGINIMRERAQRIHASFEVHSTPLQGTTVRLQLARA 667 >gi|134093849|ref|YP_001098924.1| hypothetical protein HEAR0597 [Herminiimonas arsenicoxydans] Length = 650 Score = 64.7 bits (156), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 62/239 (25%), Positives = 105/239 (43%), Gaps = 59/239 (24%) Query: 70 VVHSQEEERARLSRDLHDGISQWLVSIKLQIEAALERLRGTPEQAAQARSGFEKTATQIN 129 + +++ +ER ++S DLHDG+ +L R+ EQA T Q Sbjct: 444 LTNTRLQERLQISHDLHDGLG-----------GSLVRMMAMVEQA--------DTPLQNQ 484 Query: 130 GVLAEVRRISHDLRPALLDDLGLAAALEHLCSEWRDSAGSGAGNTAAAT----------- 178 L+ ++ I DLR + GS G AT Sbjct: 485 QFLSLLKLIRDDLRQTI-------------------DTGSSTGVKVPATPGEWIAPLRHR 525 Query: 179 --QIVFESEGKLGDGTPL-----PEVVNTV-LFRVAQEALTNIARHAGASQIRMRLYGGS 230 Q++ + E + P P + + L R+ +EA+ NI +H+ A + MR++ Sbjct: 526 FMQLLDDLEIEASWAVPAQWQTQPNALQCLALTRLVEEAMINIVKHSRAPHVHMRMWQAE 585 Query: 231 T-LLMLQVQDNGCGFDLGRVDDHSRHGIGLRNMRERMEAVGGELAIDSSAAGTRISAII 288 T LL LQ++D+G GFD+ V + IG+R+M+ R+ AVGG+L + S+ T ++ + Sbjct: 586 TELLTLQIEDDGVGFDVDAV-RQAGISIGMRSMQARIAAVGGKLDVQSAPGRTVLTVTL 643 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.318 0.133 0.370 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 434,043 Number of extensions: 13663 Number of successful extensions: 68 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 60 Number of HSP's successfully gapped: 4 Length of query: 299 Length of database: 1,000,347 Length adjustment: 81 Effective length of query: 218 Effective length of database: 733,452 Effective search space: 159892536 Effective search space used: 159892536 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 128 (53.9 bits)