BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1815.p
         (205 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094191|ref|YP_001099266.1| putative phosphoglycerate mutas...   157   5e-40

>gi|134094191|ref|YP_001099266.1| putative phosphoglycerate mutase
           [Herminiimonas arsenicoxydans]
          Length = 184

 Score =  157 bits (396), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 91/198 (45%), Positives = 122/198 (61%), Gaps = 15/198 (7%)

Query: 1   MQLYLIRHPQPLLDKHTCYGRSDIAVAPAMLAQCVTQLLPALQALPPGLAMVSSPLRRCA 60
           M LYL+RHP+P++  +TCYGR+D+AVA   LA     LLP L   P    + SSPLRRC+
Sbjct: 1   MHLYLVRHPRPIVAANTCYGRADLAVAAEELAAARASLLPVL---PKNALLFSSPLRRCS 57

Query: 61  DLAQALAEQLSWPAPALEPRLQEMDFGNWELRPWDDIPWAEVEAWNADLLHHAPGGGETL 120
           +L ++LA+ L  P P  + RL EM FG+WE+R WDDIP A V AW  D++ + PGGGE++
Sbjct: 58  ELTESLAQTLGCPTPTYDERLAEMHFGDWEMRTWDDIPRAAVNAWARDMVGYQPGGGESV 117

Query: 121 LAVAQRMWQAFASLLAQPAPGAIVICHAGSIRMLQACAAWRAEQGSAPASTPQIFDDIAL 180
           L VAQR+      L       AIVICHAG+IR+L AC     E G    S P+    +AL
Sbjct: 118 LQVAQRVRAFRDELTTLNVEHAIVICHAGTIRLLAAC-----EHG---LSIPE----MAL 165

Query: 181 RAVAQRQEIPYAQVLPLD 198
            A  +  +I Y ++L +D
Sbjct: 166 YAAQKPHKIRYGELLVVD 183


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.322    0.133    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 393,995
Number of extensions: 15569
Number of successful extensions: 53
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 52
Number of HSP's successfully gapped: 1
Length of query: 205
Length of database: 1,000,347
Length adjustment: 77
Effective length of query: 128
Effective length of database: 746,632
Effective search space: 95568896
Effective search space used: 95568896
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 126 (53.1 bits)