BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1813.p
         (344 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094189|ref|YP_001099264.1| nicotinate-nucleotide--dimethyl...   438   e-124

>gi|134094189|ref|YP_001099264.1|
           nicotinate-nucleotide--dimethylbenzimidazole
           phosphoribosyltransferase [Herminiimonas arsenicoxydans]
          Length = 357

 Score =  438 bits (1126), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 224/341 (65%), Positives = 263/341 (77%), Gaps = 1/341 (0%)

Query: 3   IPTLVSPHDADLAARLDARINDKTKPLGSLGALERLARQIGLIQGSEHPSLRQPAIVVCA 62
           +P + S HDA L+A L A IN+KTKPLGSLG LE LARQIGLIQ +  P++  PA++VCA
Sbjct: 15  LPVISSTHDATLSAALTAAINNKTKPLGSLGMLETLARQIGLIQQTVQPNIVAPALIVCA 74

Query: 63  GDHGVTAEGVSAYPQSVTWQMVENFLAGGAAINVFARQNQCALYIVDAGVNHDFGQRAGL 122
           GDHGV  E +SAYPQSVTWQMVENFLAGGAAINVFARQN CALYIVDAGVNHDFG R GL
Sbjct: 75  GDHGVVEENISAYPQSVTWQMVENFLAGGAAINVFARQNHCALYIVDAGVNHDFGVREGL 134

Query: 123 VDRKIAPGTANFCQGPAMTMAQCEAALQAGIHFVDALEVDVLGFGEMGIGNTTAAAALMA 182
           +DRK+A GT NF Q  AMT  QC  A+Q G   +  ++ +V+GFGEMGIGNTTAAAA+M 
Sbjct: 135 LDRKVAYGTRNFAQEAAMTAEQCALAMQHGAELLAGVQGNVVGFGEMGIGNTTAAAAIMH 194

Query: 183 AFTGSAVADCVGAGAGLDAQGMARKADAITRALHLH-AQAHTPLERLAALGGLEIAFMTG 241
             T   VA+CVGAG GL  +G+  K   I  A+  H A++  PLE LA  GG EIA + G
Sbjct: 195 VMTQLPVAECVGAGTGLAPEGVLHKQRVIEAAVTRHAAESMEPLEVLATFGGFEIAMIAG 254

Query: 242 AMLRAAQRRMVLLIDGFIVTSALLVAQALQPAVLEYCVFSHCSDEAGHRRMLQYLGAHPL 301
           AML AA+RRMVLLIDGFIVTSALLVA  LQPA+L+YCVF+HCSDE GHR+ML YL   P+
Sbjct: 255 AMLAAAERRMVLLIDGFIVTSALLVAARLQPAILDYCVFAHCSDEQGHRQMLAYLNVQPV 314

Query: 302 MQLDLRLGEGTGAALALPLLRSAVNFLERMATFSSASVSKQ 342
           +Q+ LRLGEGTG+ LALPLL ++VNFL  MATF SA+VS +
Sbjct: 315 LQMGLRLGEGTGSVLALPLLHASVNFLHEMATFDSAAVSNK 355


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.323    0.134    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 582,216
Number of extensions: 22366
Number of successful extensions: 86
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 85
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 1,000,347
Length adjustment: 82
Effective length of query: 262
Effective length of database: 730,157
Effective search space: 191301134
Effective search space used: 191301134
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 129 (54.3 bits)