BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1812.p
         (324 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093444|ref|YP_001098519.1| putative chemotaxis signal tran...   356   e-100
gi|134095906|ref|YP_001100981.1| putative composite two componen...    60   1e-10

>gi|134093444|ref|YP_001098519.1| putative chemotaxis signal
           transduction protein [Herminiimonas arsenicoxydans]
          Length = 322

 Score =  356 bits (914), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 184/321 (57%), Positives = 237/321 (73%), Gaps = 4/321 (1%)

Query: 1   MDSFQKEIDERTNLTASNKFELLLFRLGADPHGERSELFGINVFKIREIVPMPPVTKAAG 60
           MD+   EI+ER+ LTA+NKFEL+LFRLG  PH E+SE++GINVFK+RE++ MP V   A 
Sbjct: 1   MDATHNEINERSALTANNKFELMLFRLGVSPHSEQSEIYGINVFKLRELMAMPAVNSIAN 60

Query: 61  THSPMLGMVNIRGQIISVIDLPAVVGCVPKTGLNILLVTEYARSTQAFAVESVDEIVRLE 120
           +   MLGM NIRGQ+I VIDLPA +GC P TGLNIL+VTE+ R+ Q FAVE VDEIVRL 
Sbjct: 61  SPPHMLGMANIRGQLIPVIDLPAALGCKPATGLNILMVTEFGRTVQGFAVEEVDEIVRLN 120

Query: 121 WSQVLSAETSSGGAF-VTSIARLDHDKDTSRLAQVLDVEQILHEIMPSDR-NMKMENLEK 178
           WSQV +AE ++ G   +TSIA+LD D + +RLAQVLDVEQIL  +MPS   ++  + ++ 
Sbjct: 121 WSQVRAAEGAAAGRGTITSIAQLDADLNNTRLAQVLDVEQILRTVMPSGTADIDPDAIDN 180

Query: 179 SAGHGMRPGAVAIAADDSKVARSLIEQGLRAMEIPFEMHVTGKEAWEKIQKLAAEARAEG 238
           S    + PG + +AADDS  AR LI   L AM +P+ M  TG EAW+K+++L+A A+ EG
Sbjct: 181 SP--ILPPGTLILAADDSASARMLIGGCLDAMNLPYVMTKTGLEAWQKLEELSAAAQREG 238

Query: 239 KPISEKISFVLTDLEMPEMDGFTLTRNIKREDFLKNIPVIIHSSLSGSANEDHVRGVGGD 298
           + +S+K++ VLTDLEMPEMDGFTLT+ IK +     IPV+IHSSLSG++NE HV G G D
Sbjct: 239 QDVSDKVALVLTDLEMPEMDGFTLTKKIKSDPRFTKIPVVIHSSLSGASNEVHVHGAGAD 298

Query: 299 AYVAKFEANELAATIYGVLDK 319
           AY AKF+A ELA T+  VL K
Sbjct: 299 AYAAKFKAEELAVTLRDVLAK 319


>gi|134095906|ref|YP_001100981.1| putative composite two component
            regulatory (sensor histidine kinase and response
            regulator hybrid) transcription regulator protein
            [Herminiimonas arsenicoxydans]
          Length = 1969

 Score = 60.1 bits (144), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 69/141 (48%), Gaps = 14/141 (9%)

Query: 182  HGMRPGAVAIAADDSKVARSLIEQGLRAMEIPFEMHVTGKEAWEKIQKLAAEARAEGKPI 241
             G+R   + +  DDS   R + ++ L        +   G +A + +Q +  +        
Sbjct: 1839 QGLRTQHIVMVVDDSLTVRRVTQRLLTREGYQVVLAKDGVDALQHLQSVTPD-------- 1890

Query: 242  SEKISFVLTDLEMPEMDGFTLTRNIKREDFLKNIPVIIHSSLSGSANEDHVRGVGGDAYV 301
                  +L D+EMP MDGF LTRNI+ ++  ++IP+I+ +S + S + ++   +G + Y+
Sbjct: 1891 -----VMLVDIEMPRMDGFDLTRNIRDDERTRDIPIIMITSRTASKHRNYAMELGVNEYL 1945

Query: 302  AK-FEANELAATIYGVLDKNM 321
             K ++   L   I G + K M
Sbjct: 1946 GKPYQEEALVKLIAGFIKKEM 1966


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.317    0.133    0.369 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 571,218
Number of extensions: 22151
Number of successful extensions: 119
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 122
Number of HSP's successfully gapped: 2
Length of query: 324
Length of database: 1,000,347
Length adjustment: 82
Effective length of query: 242
Effective length of database: 730,157
Effective search space: 176697994
Effective search space used: 176697994
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 129 (54.3 bits)