BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1809.p
         (621 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095247|ref|YP_001100322.1| excinuclease ABC subunit C [Her...  1079   0.0  

>gi|134095247|ref|YP_001100322.1| excinuclease ABC subunit C
           [Herminiimonas arsenicoxydans]
          Length = 618

 Score = 1079 bits (2791), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 506/612 (82%), Positives = 563/612 (91%)

Query: 10  PDPREVVLETVARLPHLPGVYRYFDADDNVLYVGKARDLKKRVSSYFQKTLTSPRIAMMV 69
           PDPR +VL+TVA+LP+LPGVYRYFDA++N+LYVGKARDLKKRVSSYF K L SPR A+MV
Sbjct: 7   PDPRAIVLDTVAKLPNLPGVYRYFDAENNLLYVGKARDLKKRVSSYFLKNLASPRTALMV 66

Query: 70  ERIARLETTVTRSEAEALLLENNLIKTLRPRFNILFRDDKSYPYLKLTGHAFPRMAYYRG 129
           E+IARLETT+TRSEAEALLLENNLIKTL+PR+NILFRDDKSYPYLK+TG  FPRMAYYRG
Sbjct: 67  EKIARLETTITRSEAEALLLENNLIKTLQPRYNILFRDDKSYPYLKITGQKFPRMAYYRG 126

Query: 130 AVDKRNQYFGPFPNAGAVKESIQILQKVFRLRTCEDTVFANRTRPCLLHQIHRCSGPCVN 189
           AVDK+NQYFGPFP+  AVKES+QILQKVF LRTCED+VFANRTRPCLLHQIHRCS PCVN
Sbjct: 127 AVDKKNQYFGPFPSGWAVKESMQILQKVFLLRTCEDSVFANRTRPCLLHQIHRCSAPCVN 186

Query: 190 LVSSEDYAIDVENAAKFLRGRQSEVMQALEQKMHAFAADLKFEQAAAVRDQIGSLSSVLH 249
            +S EDYA+DV+NAAKFLRGRQ+EV++ L+ KM A+A +LKFEQAA VR+QI +LS VLH
Sbjct: 187 YISQEDYALDVDNAAKFLRGRQTEVLEVLQAKMLAYAEELKFEQAALVRNQINALSRVLH 246

Query: 250 QQSMETVSDADIDIIAVVVQGGRACVNLAMVRGGRHLGDRAYFPTHVDDAMDTAEDSIEV 309
           QQSM+T  DADIDIIAV+VQGGRACVNLAMVRGGRHLGDRAYFPTHVD+ +  AE+S+  
Sbjct: 247 QQSMDTGGDADIDIIAVIVQGGRACVNLAMVRGGRHLGDRAYFPTHVDNVLTNAEESVAA 306

Query: 310 EVLKAFLAQHYIDKFIPGSLIVGTEFDDPALMLALMEQCGHRIALTFQPQGQRRQWLEMA 369
           EV+KAFLAQHYIDKFIPG+LI+ TE D+P LMLALM+QCGHRI L FQPQG RRQWLEMA
Sbjct: 307 EVMKAFLAQHYIDKFIPGTLILNTEIDEPELMLALMQQCGHRINLIFQPQGPRRQWLEMA 366

Query: 370 AKGAEIALARLLSEQGSQQARTRALAEVLELEREDLDELRAECFDISHTQGEATQASCVV 429
            KGAEI+LARLLSEQGSQQ RTR L + L+++ ED++  R ECFDISHTQGEATQASCVV
Sbjct: 367 QKGAEISLARLLSEQGSQQTRTRMLVDALKIDVEDIEAFRVECFDISHTQGEATQASCVV 426

Query: 430 FHHHAMQNGEYRRYNINDITPGDDYAAMRQVLTRRYEKVANGEGVMPDIVLIDGGRGQVE 489
           FHHHAMQNGEYRRYNINDITPGDDYAAMRQVL RRYEKVANG+GVMPD+VLIDGG+GQVE
Sbjct: 427 FHHHAMQNGEYRRYNINDITPGDDYAAMRQVLMRRYEKVANGDGVMPDVVLIDGGKGQVE 486

Query: 490 MARQVLTELGLDISLIVGVAKGEGRKVGLETLVFADGRAPKELGKESAALMLIAQIRDEA 549
           MARQV  ELGLDISLIVGVAKGEGRKVGLETLVF DGRAP+ELGKES ALMLIAQIRDEA
Sbjct: 487 MARQVFVELGLDISLIVGVAKGEGRKVGLETLVFVDGRAPQELGKESGALMLIAQIRDEA 546

Query: 550 HRFAITGMRAKRAKARQSSRLEEIEGIGAKRRQRLLVRFGGLRGVADASVDELASVEGIS 609
           HRFAITGMRAKRAKARQ+SRLEEIEGIGAKRRQ+LL RFGGLRGV DASV++L+SVEGIS
Sbjct: 547 HRFAITGMRAKRAKARQTSRLEEIEGIGAKRRQKLLARFGGLRGVVDASVEDLSSVEGIS 606

Query: 610 RQLAEEIYRQLH 621
           RQLAE+IY+QLH
Sbjct: 607 RQLAEDIYKQLH 618


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.321    0.136    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 1,038,502
Number of extensions: 39955
Number of successful extensions: 102
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 102
Number of HSP's successfully gapped: 1
Length of query: 621
Length of database: 1,000,347
Length adjustment: 87
Effective length of query: 534
Effective length of database: 713,682
Effective search space: 381106188
Effective search space used: 381106188
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 132 (55.5 bits)