BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1806.p
         (257 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095250|ref|YP_001100325.1| pyridoxine 5'-phosphate synthas...   397   e-112

>gi|134095250|ref|YP_001100325.1| pyridoxine 5'-phosphate synthase
           [Herminiimonas arsenicoxydans]
          Length = 255

 Score =  397 bits (1020), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 197/250 (78%), Positives = 216/250 (86%)

Query: 1   MSFLQPAGPSIELGINIDHVATLRNARGTRYPDPIRAALEAEEAGADAITLHLREDRRHI 60
           MSFLQP    I+LGINIDHVATLRNARGT YP P++AAL+AEEAGADAITLHLREDRRHI
Sbjct: 1   MSFLQPQSSIIDLGINIDHVATLRNARGTVYPYPLQAALQAEEAGADAITLHLREDRRHI 60

Query: 61  RDDDVKAIRPLLQTRMNLEAAVTKEMIDFACAIQPQDVCLVPEKRTEVTTEGGLDVRGHF 120
           RD DV+ IRP L+TRMNLE+AVT EMIDFAC I+PQDVCLVPE+R EVTTEGGLD+  +F
Sbjct: 61  RDADVELIRPQLRTRMNLESAVTSEMIDFACRIKPQDVCLVPERREEVTTEGGLDIVKYF 120

Query: 121 SDVQAAIAQLQQERIRVSLFIDADIEQIQAAAESGAPVIELHTGRYADATSAQEQQEELE 180
           S+V AAI QLQ E IRVSLFIDAD+ QIQAAAE+GAPVIELHTGRYADA     QQ EL+
Sbjct: 121 SEVSAAIRQLQGEGIRVSLFIDADVAQIQAAAEAGAPVIELHTGRYADAHDEAGQQMELQ 180

Query: 181 RIRAAVHEGVKLGLKVNAGHGLHYTNVQAIAAIPQIAELNIGHAVVAHAVFAGWRNAVSE 240
           R++  VHEGVK GLKVNAGHGLHYTNVQAIAAI  IAELNIGHA+VAHAVF GW+NAV E
Sbjct: 181 RVKQGVHEGVKRGLKVNAGHGLHYTNVQAIAAIQDIAELNIGHAIVAHAVFVGWQNAVRE 240

Query: 241 MKAIMVKARL 250
           MKAIM  ARL
Sbjct: 241 MKAIMTAARL 250


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.319    0.132    0.371 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 396,495
Number of extensions: 13029
Number of successful extensions: 58
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 58
Number of HSP's successfully gapped: 1
Length of query: 257
Length of database: 1,000,347
Length adjustment: 80
Effective length of query: 177
Effective length of database: 736,747
Effective search space: 130404219
Effective search space used: 130404219
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)