BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1805.p
         (288 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095251|ref|YP_001100326.1| DNA repair protein RecO [Hermin...   382   e-107

>gi|134095251|ref|YP_001100326.1| DNA repair protein RecO
           [Herminiimonas arsenicoxydans]
          Length = 284

 Score =  382 bits (980), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 191/282 (67%), Positives = 221/282 (78%), Gaps = 10/282 (3%)

Query: 7   ASKLDAQLDGQAADPAVTPSVPQAPAKAPARKPATPRARSRAVPEKEHKVLAQPGFVLHS 66
           A+  D QL        V  +V   PAK   R+P T         EK+ ++  QPGFVLHS
Sbjct: 13  AASADEQLASSGDAGLVQTAV--TPAKTTTRRPRTL--------EKDSRIAEQPGFVLHS 62

Query: 67  YPYKETSLIIDVFSRDHGRVALVAKGAKRPHSKLRGALQTFQPLSLSWSGKSEVRTLTDA 126
           YPYKETSLI+DVF+RDHGR+ALVAKGAKRPHSKLRG LQTFQPLS+SWSGK+EVRTLT A
Sbjct: 63  YPYKETSLIVDVFTRDHGRIALVAKGAKRPHSKLRGVLQTFQPLSVSWSGKAEVRTLTSA 122

Query: 127 EWVGGLLPLEKSALLCGFYLNELLVKLLAREDAHPALFDHYVATLNKLAHGENAPIVLRQ 186
           EWVGGLLPLEKSALLCGFYLNELLVKLLAR+D+HPALF+HYV+ LN+LAH E A IVLR+
Sbjct: 123 EWVGGLLPLEKSALLCGFYLNELLVKLLARDDSHPALFNHYVSALNQLAHDEPAAIVLRK 182

Query: 187 FERILLKQTGVAGNWSHCVVSGKAVQPDGIYVVDPEQGTRPERLSDRAPKVSGKTLLDME 246
           FER LLK++GV+G+W  C  +   +     YVVDPE+G RP R +D  P V+GKTLLDME
Sbjct: 183 FERALLKESGVSGDWKICTATRNPLLGGINYVVDPERGPRPARPADTWPHVAGKTLLDME 242

Query: 247 REDYSDPTTQLQSKFLMRYLLAHHLGGAQLNTRQILIDLMQL 288
           +EDYSD  TQ+QSKFLMR+LLAHHL GA LNTRQILIDL+QL
Sbjct: 243 KEDYSDAATQMQSKFLMRFLLAHHLNGAPLNTRQILIDLLQL 284


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.318    0.133    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 527,888
Number of extensions: 20562
Number of successful extensions: 48
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 48
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 1,000,347
Length adjustment: 81
Effective length of query: 207
Effective length of database: 733,452
Effective search space: 151824564
Effective search space used: 151824564
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 128 (53.9 bits)