BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1804.p
         (306 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095252|ref|YP_001100327.1| GTP-binding protein Era [Hermin...   520   e-149
gi|134096615|ref|YP_001101690.1| tRNA modification GTPase TrmE [...    69   4e-13
gi|134094495|ref|YP_001099570.1| GTP-binding protein EngA [Hermi...    65   3e-12

>gi|134095252|ref|YP_001100327.1| GTP-binding protein Era
           [Herminiimonas arsenicoxydans]
          Length = 300

 Score =  520 bits (1339), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 244/293 (83%), Positives = 272/293 (92%)

Query: 14  SDYRCGYIAIVGRPNVGKSTLMNVLVGAKVSITSRKAQTTRHRITGIQTIENTQYVYVDT 73
           S +RCGYIAIVGRPNVGKSTLMN L+GAKVSITSRKAQTTRHRITGIQT+++ Q+VYVDT
Sbjct: 8   SHFRCGYIAIVGRPNVGKSTLMNELIGAKVSITSRKAQTTRHRITGIQTVDDAQFVYVDT 67

Query: 74  PGFQTRHSNALNKTLNRTVTNTLTAADVILFVIEAGTFGPADKQVLDLLPANVPCILVLN 133
           PGFQTRHSNALNKTLNRTVT TLTA+DVILFVIEAGTFG AD+QVLDL+P NVPCILV+N
Sbjct: 68  PGFQTRHSNALNKTLNRTVTTTLTASDVILFVIEAGTFGQADQQVLDLIPKNVPCILVIN 127

Query: 134 KADRNKDKTTLMPFAREVASHHDFAAVVPVSAKQRFQLDRLQEEVRKLLPQNPPMFDEDD 193
           K+DR KDK  L+PFA+++A+  DF AVVPVSAK RFQL+ LQ E++K LP+NPP+F EDD
Sbjct: 128 KSDRVKDKAVLLPFAQQIAAKRDFTAVVPVSAKLRFQLENLQGEIKKHLPENPPVFGEDD 187

Query: 194 ITDRSEKFLASEIVREKVFRFVGEELPYTSTVLIEKFEQEGNLRRIFAAILVERDNHKAM 253
           ITDRSEKFLA+EIVREK+FRFVG+ELPYTSTVLIEKFE EGNLRR+FAAILVERD HK+M
Sbjct: 188 ITDRSEKFLAAEIVREKLFRFVGDELPYTSTVLIEKFELEGNLRRVFAAILVERDTHKSM 247

Query: 254 VIGQKGARLKEISTQSRLDMERLFGGPVYLEIWVKVKSGWADNEAGLRAYGYE 306
           VIG KG RLK+ISTQ+RLDMERLFGGPVYLEIWVKVKSGWADNEAGLRAYGYE
Sbjct: 248 VIGNKGERLKDISTQARLDMERLFGGPVYLEIWVKVKSGWADNEAGLRAYGYE 300


>gi|134096615|ref|YP_001101690.1| tRNA modification GTPase TrmE
           [Herminiimonas arsenicoxydans]
          Length = 466

 Score = 68.6 bits (166), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 48/138 (34%), Positives = 77/138 (55%), Gaps = 9/138 (6%)

Query: 21  IAIVGRPNVGKSTLMNVLVGAKVSITSRKAQTTRHRITGIQTIENTQYVYVDTPGFQTRH 80
           I + G+PNVGKS+L+N L G+ V+I +  A TTR ++     IE      +DT G +   
Sbjct: 227 IVLAGQPNVGKSSLLNALAGSDVAIVTPIAGTTRDKVIETIQIEGIPVNVIDTAGIRDA- 285

Query: 81  SNALNKTLNRTVTNTLTA---ADVILFVIEAGTFGP--ADKQVLDLLPANVPCILVLNKA 135
           ++A ++     +  T  A   ADVI+ +++A + GP  AD+Q+ +  PANVP + V NK 
Sbjct: 286 ADAGDEVERIGIERTWAAVQTADVIVHMLDA-SRGPTRADEQITERFPANVPVMRVWNKI 344

Query: 136 DRNKDKTTL--MPFAREV 151
           D +  +  +  MP A  +
Sbjct: 345 DLSGHRPAIDRMPDATHI 362


>gi|134094495|ref|YP_001099570.1| GTP-binding protein EngA
           [Herminiimonas arsenicoxydans]
          Length = 447

 Score = 65.5 bits (158), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 64/234 (27%), Positives = 106/234 (45%), Gaps = 27/234 (11%)

Query: 21  IAIVGRPNVGKSTLMNVLVGAKVSITSRKAQTTRHRITGIQTIENTQYVYVDTPGFQTRH 80
           IA+VGRPNVGKSTL N L  ++ ++ +     TR R  G   +    ++ +DT GF+   
Sbjct: 5   IALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRMGERPFLVIDTGGFEPVA 64

Query: 81  SNALNKTLNRTVTNTLTAADVILFVIEA-GTFGPADKQVLDLL-PANVPCILVLNKADRN 138
              +   + +     +  ADV++F+++      P DK + D L  +    +LV+NKA+  
Sbjct: 65  KEGIMHEMAKQTKQAVAEADVVIFIVDGRQGLTPHDKTITDFLRKSGRSVMLVVNKAEG- 123

Query: 139 KDKTTLMPFAREVASHHDFAAVVP--VSAKQRFQLDRLQEEVRKL-LPQNPPMFDEDDIT 195
                 M +    A  ++     P  +SA     +  L EE   +   Q PP  +  +  
Sbjct: 124 ------MKYTMVTADFYELGLGDPYVISAAHGDGVSDLVEESLDIAFAQRPPEEEVPESK 177

Query: 196 DRSEKF------------LASEIVREKVFRFVGEELPYTSTVLIE-KFEQEGNL 236
           DRS +             L + ++ E+  R +  +LP T+   IE  FE+EG L
Sbjct: 178 DRSIRLAIVGRPNVGKSTLVNTLLGEE--RVIAFDLPGTTRDSIEIPFEREGKL 229


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.319    0.134    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 553,748
Number of extensions: 20764
Number of successful extensions: 99
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 98
Number of HSP's successfully gapped: 3
Length of query: 306
Length of database: 1,000,347
Length adjustment: 81
Effective length of query: 225
Effective length of database: 733,452
Effective search space: 165026700
Effective search space used: 165026700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 128 (53.9 bits)