BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1803.p
         (334 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095253|ref|YP_001100328.1| RNase III, ds RNA (partial matc...   472   e-134

>gi|134095253|ref|YP_001100328.1| RNase III, ds RNA (partial match)
           [Herminiimonas arsenicoxydans]
          Length = 328

 Score =  472 bits (1214), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 241/334 (72%), Positives = 271/334 (81%), Gaps = 6/334 (1%)

Query: 1   MDPQLLQQRLGHTFKDAALLQQALTHRSHSALHNERLEFLGDSVLNCVVASLLFERYDKI 60
           MD  LLQ RLGHTFKDA L+QQALTHRSHS++HNERLEFLGDS+LNCVVASLLF+RY KI
Sbjct: 1   MDVTLLQNRLGHTFKDAVLMQQALTHRSHSSVHNERLEFLGDSILNCVVASLLFDRYSKI 60

Query: 61  DEGDLSRLRANLVKQQSLYEIAQRLELSQFLRLGEGELKSGGFRRPSILADTLEALFGAI 120
           DEGDLSRLRANLVKQQSLYEIAQRLELSQFLRLGEGELKSGGFRRPSILADTLEALFGAI
Sbjct: 61  DEGDLSRLRANLVKQQSLYEIAQRLELSQFLRLGEGELKSGGFRRPSILADTLEALFGAI 120

Query: 121 FLDSGFEAARAVIRSLYVPVLEHVDPKTLGKDAKTLLQEFLQGKKIPLPQYNVIATHGAA 180
           FLD+GF AAR VIR+LY+P+L+ VDPKTLGKDAKTLLQE+LQGKKI LPQYNV+ATHGAA
Sbjct: 121 FLDAGFNAARDVIRALYIPILDSVDPKTLGKDAKTLLQEYLQGKKIALPQYNVVATHGAA 180

Query: 181 HSQEFEIECLVPKLDIQVFGTGGSRRAGEQAAAKLALEAVQLALAKTPSASRKPRTRTTQ 240
           H+QEFEIECLVPKLDIQVFGTGGSRRAGEQAAAKLALEAVQ AL KTP +SRK + RT Q
Sbjct: 181 HNQEFEIECLVPKLDIQVFGTGGSRRAGEQAAAKLALEAVQAALVKTPGSSRKSKPRTAQ 240

Query: 241 LKLAGIATIQPDAPDQESAKSPRPEAAVSKPAKEAKPAREHKEQKEQKEQKEQQKDGRSQ 300
           LKLAGIAT+QPDAP       P  +++    AK AK   E K + +   Q+++  D +  
Sbjct: 241 LKLAGIATVQPDAPPLNEV-VPALKSSSKADAKSAKA--EVKAESDLATQQDKPSDAQKS 297

Query: 301 NGARHEGKHTGDRTETVAAEPISAASSASQSRTA 334
             A    + T D     AA   + +S+ S S+ A
Sbjct: 298 LIAEAHAEQTSDAASDHAA---NKSSTTSHSKIA 328


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.314    0.129    0.352 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 557,547
Number of extensions: 21022
Number of successful extensions: 61
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 61
Number of HSP's successfully gapped: 1
Length of query: 334
Length of database: 1,000,347
Length adjustment: 82
Effective length of query: 252
Effective length of database: 730,157
Effective search space: 183999564
Effective search space used: 183999564
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 129 (54.3 bits)