BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1800.p
         (97 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095257|ref|YP_001100332.1| hypothetical protein HEAR2067 [...    80   2e-17

>gi|134095257|ref|YP_001100332.1| hypothetical protein HEAR2067
          [Herminiimonas arsenicoxydans]
          Length = 93

 Score = 80.5 bits (197), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 44/86 (51%), Positives = 61/86 (70%), Gaps = 4/86 (4%)

Query: 14 LQFIIYSRSYCHLCEDLRDALCQALGATPAH-IEMIDVDADDALVARYDELVPVLMGQGR 72
          ++F +YSR+YCHLC+D+  AL  AL  + AH + ++DVDAD  L+A+YDELVPVL+  G+
Sbjct: 2  IKFTLYSRTYCHLCDDMLAAL-HALNISEAHSVSVVDVDADALLLAQYDELVPVLVA-GK 59

Query: 73 DGR-WHELCHYHLDPVRLQAFVAEKE 97
            R   +LCHY LD   ++AFVA  E
Sbjct: 60 GARPAQQLCHYFLDEAAVRAFVAGAE 85


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.324    0.139    0.441 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 199,409
Number of extensions: 7798
Number of successful extensions: 27
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 25
Number of HSP's successfully gapped: 1
Length of query: 97
Length of database: 1,000,347
Length adjustment: 65
Effective length of query: 32
Effective length of database: 786,172
Effective search space: 25157504
Effective search space used: 25157504
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 121 (51.2 bits)