BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1799.p
         (492 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095258|ref|YP_001100333.1| putative serine protease [Hermi...   689   0.0  
gi|134096211|ref|YP_001101286.1| putative HtrA-like serine prote...   249   3e-67

>gi|134095258|ref|YP_001100333.1| putative serine protease
           [Herminiimonas arsenicoxydans]
          Length = 491

 Score =  689 bits (1779), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/483 (71%), Positives = 408/483 (84%), Gaps = 9/483 (1%)

Query: 8   LAGALLAASVFAAAPAVLAAPPVASPAVAALPDFADIVERTGPAVVNIRTTERVRQNAQG 67
           +A A L       AP+ +AAP     +VA LPDF D+VE+TG AVVNIRTTE+ + N QG
Sbjct: 15  VASAFLVPVTTGLAPSAMAAP-----SVAGLPDFTDLVEKTGAAVVNIRTTEKAKVN-QG 68

Query: 68  QGGMDDPEMQEFFRRFFGIPIP-RQQQPGTPRGNGKQGGQGQQEEVPRGVGSGFIISADG 126
               +D EMQEFFRRFFG+PIP RQQQP  PRG  K   + + EEVPRGVGSGFIISADG
Sbjct: 69  NSTSEDEEMQEFFRRFFGVPIPPRQQQPA-PRGRNKPDAEAE-EEVPRGVGSGFIISADG 126

Query: 127 FILTNAHVVDGASEVYVTLTDKREFKAKIVGSDTRTDVAVLKIDGSNLPRLNMGDSDKIR 186
           +++TNAHVVDGA EVYVTLTDKREFKAKI+G+D RTDVA++KIDGSNLPRL +GDS+KIR
Sbjct: 127 YVMTNAHVVDGADEVYVTLTDKREFKAKIIGADKRTDVALVKIDGSNLPRLTVGDSNKIR 186

Query: 187 VGEWVLAIGSPFGLENTVTAGIVSAKARDTGDYLPLIQTDVAVNPGNSGGPLINLKGEVI 246
           VGEWV+AIGSPFGL+NTVTAGIVSAKARDTG+YLPLIQTDVAVNPGNSGGPLIN++GEVI
Sbjct: 187 VGEWVIAIGSPFGLDNTVTAGIVSAKARDTGEYLPLIQTDVAVNPGNSGGPLINMRGEVI 246

Query: 247 GINSQIYSRSGGFMGISFAVPIDEALRVAEQLKASGRVTRGRIGVQIGEVTKDVAESLGL 306
           GINSQIYSRSGG+MGISFAVP+DEA+RV++QL+ SG+VTRGRIGVQIGEVTKDVAESLGL
Sbjct: 247 GINSQIYSRSGGYMGISFAVPMDEAMRVSDQLRTSGKVTRGRIGVQIGEVTKDVAESLGL 306

Query: 307 ARAQGALVQRVEAGGPAEKAGLEAGDIILKYNGAAIERPSDLPRMVGATKPGAKATVNIW 366
            RAQGALVQRVEAGGPAEKAG+EAGD+ILK+NG A+ER SDLPR+VG+TKPG ++T+ +W
Sbjct: 307 TRAQGALVQRVEAGGPAEKAGVEAGDVILKFNGVAVERSSDLPRVVGSTKPGTRSTLTVW 366

Query: 367 RKGSARDVTLTVVELEADKPKQAEEKKAKPDNTPNSLGLVVSDLTDAQKKDLKVDNGVLV 426
           RKG+ RD+ + + ELE +K  + E KKAKP+   N+LGLVVSDLT AQ K+LK+D GVLV
Sbjct: 367 RKGAMRDLNVMITELEPEKAAKPEVKKAKPEQVANTLGLVVSDLTPAQVKELKIDGGVLV 426

Query: 427 EAVSGAAAGAGIRPGDVIQRLNEVDINDAKQFAQLVAKLDAKKRAAVLVRRGDASQFVPL 486
           E+   ++A AG+R GD++ RLN  DI DA+QF  LVAKLD KK A +LVRRGD+SQFV +
Sbjct: 427 ESAENSSARAGLRAGDILLRLNNTDIKDARQFNALVAKLDPKKTALLLVRRGDSSQFVTI 486

Query: 487 RPN 489
           +P+
Sbjct: 487 KPH 489


>gi|134096211|ref|YP_001101286.1| putative HtrA-like serine protease
           [Herminiimonas arsenicoxydans]
          Length = 391

 Score =  249 bits (635), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 150/357 (42%), Positives = 212/357 (59%), Gaps = 33/357 (9%)

Query: 41  FADIVERTGPAVVNIRTTERV--RQNAQGQGGMDDPEMQEFFRRFFGIPIPRQQQPGTPR 98
           F D  +   P+VVNI T++     QN      MDDP    FFR+FFG     QQ+     
Sbjct: 62  FRDAAKLAMPSVVNIFTSKTATPSQNPF----MDDP----FFRKFFGDRFDDQQE----- 108

Query: 99  GNGKQGGQGQQEEVPRGVGSGFIISADGFILTNAHVVDGASEVYVTLTDKREFKAKIVGS 158
              KQ            +GSG I+SA G+ILTN HVV+ A E+ V L D R+  AK+VG+
Sbjct: 109 ---KQ----------VSLGSGVIVSAQGYILTNNHVVEAADEIEVALADGRKAIAKVVGA 155

Query: 159 DTRTDVAVLKIDGSNLPRLNMGDSDKIRVGEWVLAIGSPFGLENTVTAGIVSAKARDTGD 218
           D  TD+AV+KID  NLP + +G  ++ RVG+ VLAIG+PFG+  TVT GI+SA  R+   
Sbjct: 156 DPETDLAVVKIDLDNLPAITLGHVEEARVGDVVLAIGNPFGVGQTVTMGIISALGRNHLG 215

Query: 219 YLP----LIQTDVAVNPGNSGGPLINLKGEVIGINSQIYSRSGGFMGISFAVPIDEALRV 274
            L      IQTD A+NPGNSGG LI+  G ++GIN+ IYSRSGG +GI FA+P+     V
Sbjct: 216 ILDAFENFIQTDAAINPGNSGGALIDANGNLLGINTAIYSRSGGSLGIGFAIPVTTVKSV 275

Query: 275 AEQLKASGRVTRGRIGVQIGEVTKDVAESLGLARAQGALVQRVEAGGPAEKAGLEAGDII 334
            + +  +G+V RG IGV+  ++T ++AES GL +++GA++  V  GGPA+KAG++ GDI+
Sbjct: 276 MDAIIKNGQVVRGYIGVEPQDITPELAESFGLKKSKGAIIAGVLKGGPADKAGMQPGDIL 335

Query: 335 LKYNGAAIERPSDLPRMVGATKPGAKATVNIWRKGSARDVTLTVVELEADKPKQAEE 391
           +   G A+   +D+   +    PG KA   + R+     + +T + L    P +A E
Sbjct: 336 VSVEGKAVVDMADMLNQIAQLSPGTKAKFIVLRRNQENTLNVT-IGLRPKAPSRASE 391


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.314    0.134    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 781,941
Number of extensions: 30404
Number of successful extensions: 75
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 71
Number of HSP's successfully gapped: 2
Length of query: 492
Length of database: 1,000,347
Length adjustment: 85
Effective length of query: 407
Effective length of database: 720,272
Effective search space: 293150704
Effective search space used: 293150704
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 131 (55.1 bits)