BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1797.p
         (233 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095260|ref|YP_001100335.1| transmembrane sigmaE factor neg...   129   1e-31

>gi|134095260|ref|YP_001100335.1| transmembrane sigmaE factor
           negative regulator protein [Herminiimonas
           arsenicoxydans]
          Length = 186

 Score =  129 bits (325), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 96/231 (41%), Positives = 125/231 (54%), Gaps = 50/231 (21%)

Query: 7   TREQISALADGELGSEEMTLAFAALRSSKDAQDAWEDYHRIGEVLRSEEMDVSLSAGFSA 66
           TREQISA AD EL    + +  AALR  +D ++AW  YH+IG+ LRS+++++     F+A
Sbjct: 2   TREQISAFADNELSDGHLEITLAALRQ-QDGREAWTLYHQIGDALRSDDLNLQPDTAFTA 60

Query: 67  RMSALLEAEPTIVAPQPAAAQPVAPVAQPVVATQAGKAANGDHRATRPGRLVRLLMPSAA 126
           R+ A LEAEPTI+ P               V  + G          R   L R  MP  A
Sbjct: 61  RIFASLEAEPTIMVP---------------VEKRIGGG--------RESTLKRFAMPGMA 97

Query: 127 AAAAAVAAVFVALPQ---QQALVTADANKAVAPVAQVASAPVNVPSAIATVAETNGNPQN 183
            AA A  A F+ +PQ   Q A + A ++ A APV   A+ P  V     TVA        
Sbjct: 98  VAAVA-VAAFLTVPQMMPQHAPLVA-SHSASAPVVLAAAGPETV-----TVA-------- 142

Query: 184 VNQLSSLAQQGEVKRDPRIDDYLFAHQRFSPS-YSSAQYARSAAFSSDADK 233
                  + +G+V RDPRID+YL AHQRFSPS YS+AQYARSA F+ D+DK
Sbjct: 143 -------SHEGDVLRDPRIDEYLLAHQRFSPSVYSTAQYARSATFAVDSDK 186


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.312    0.122    0.329 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 260,519
Number of extensions: 6339
Number of successful extensions: 28
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 26
Number of HSP's successfully gapped: 1
Length of query: 233
Length of database: 1,000,347
Length adjustment: 79
Effective length of query: 154
Effective length of database: 740,042
Effective search space: 113966468
Effective search space used: 113966468
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 127 (53.5 bits)