BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1795.p
         (165 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095262|ref|YP_001100337.1| hypothetical protein HEAR2072 [...    78   2e-16

>gi|134095262|ref|YP_001100337.1| hypothetical protein HEAR2072
           [Herminiimonas arsenicoxydans]
          Length = 166

 Score = 78.2 bits (191), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 58/160 (36%), Positives = 88/160 (55%), Gaps = 9/160 (5%)

Query: 1   MSIAVSADIKPSR-LLLLVNGFACLCVALMGVLVPFWTPGSWSWL---ERLVLALACILA 56
           MSIAVSA ++PSR L LLV G   +   + G++      G    L    R+ L + CI  
Sbjct: 1   MSIAVSAVVQPSRRLFLLVGGMLVILFFIAGLI----ASGRMETLPIAARIALTVMCIAV 56

Query: 57  AVLALVLVLRERKIIWLHISASGQIRVVEHLLPSARAKPQVMKAGLAQLLAGSTIWPGML 116
           A+     V+  RKI  +HIS +GQIR+++           V +  +  LL  ST+W G+L
Sbjct: 57  ALHVFFHVMWRRKIYVIHISGTGQIRILQRQKNGPSGYDSV-EGEVVHLLPVSTLWSGLL 115

Query: 117 FLRLRLENGKTRTIPILTDSVSEDTFRALSVACRWLISHN 156
            L L+ +  +T  + IL DSVS  +F+A+ +ACRW++S +
Sbjct: 116 LLHLQNDQQQTVVVTILPDSVSPASFKAVLLACRWIVSRH 155


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.327    0.137    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 277,834
Number of extensions: 9040
Number of successful extensions: 49
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 47
Number of HSP's successfully gapped: 1
Length of query: 165
Length of database: 1,000,347
Length adjustment: 75
Effective length of query: 90
Effective length of database: 753,222
Effective search space: 67789980
Effective search space used: 67789980
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 125 (52.8 bits)