BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1792.p (251 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095265|ref|YP_001100340.1| 3-oxoacyl-[acyl-carrier-protein... 406 e-115 gi|134093831|ref|YP_001098906.1| 3-oxoacyl-[acyl-carrier-protein... 184 5e-48 gi|134095523|ref|YP_001100598.1| 3-oxoacyl-[acyl-carrier-protein... 176 9e-46 gi|134096030|ref|YP_001101105.1| 3-ketoacyl-(acyl-carrier-protei... 142 1e-35 gi|134095010|ref|YP_001100085.1| D-beta-hydroxybutyrate dehydrog... 112 2e-26 >gi|134095265|ref|YP_001100340.1| 3-oxoacyl-[acyl-carrier-protein] reductase [Herminiimonas arsenicoxydans] Length = 247 Score = 406 bits (1044), Expect = e-115, Method: Compositional matrix adjust. Identities = 201/250 (80%), Positives = 224/250 (89%), Gaps = 4/250 (1%) Query: 1 MSAQNLQGQVALVTGASRGIGRAIATELAKQGAKVVGTATSESGAVAITEYLAALGPEAG 60 M+ L GQVALVTGASRGIGRAIA LAKQG KV+GTATSESGA AI+EYLA E+G Sbjct: 1 MTTVELAGQVALVTGASRGIGRAIAQALAKQGVKVIGTATSESGAAAISEYLA----ESG 56 Query: 61 RGAVLNVNDAQASVALVEQVQKEFGALSILVNNAGITQDQLAMRMKEEEWDSVIATNLTA 120 +G VL+VNDA SVAL++++QKEFG ++ILVNNAGITQDQLAMRMK+EEWDSVIATNLT+ Sbjct: 57 KGVVLDVNDAARSVALIDEIQKEFGTVTILVNNAGITQDQLAMRMKDEEWDSVIATNLTS 116 Query: 121 VGRLSRAVLRGMMKARSGRIINITSVVGEAGNPGQMNYAAAKAGVAGMSRALAREVGSRN 180 VGRLSRAVLRGMMKA+ GRIINITSVVG GN GQMNYAAAKAGVAGMSRALARE+GSRN Sbjct: 117 VGRLSRAVLRGMMKAKHGRIINITSVVGSTGNAGQMNYAAAKAGVAGMSRALAREIGSRN 176 Query: 181 ITVNCVAPGFIDTDMTKALSEQQSAAILQQIPLARLGAAEEIAYAVAFLASPQAAYITGT 240 ITVNCVAPGFIDTDMTK LSEQQ +A+LQQ+PL RLG E+IA AV+FLASPQA+YITGT Sbjct: 177 ITVNCVAPGFIDTDMTKTLSEQQISALLQQVPLGRLGVPEDIAAAVSFLASPQASYITGT 236 Query: 241 TLNVNGGMYM 250 TL+VNGGMYM Sbjct: 237 TLHVNGGMYM 246 >gi|134093831|ref|YP_001098906.1| 3-oxoacyl-[acyl-carrier-protein] reductase [Herminiimonas arsenicoxydans] Length = 246 Score = 184 bits (466), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 104/245 (42%), Positives = 155/245 (63%), Gaps = 5/245 (2%) Query: 9 QVALVTGASRGIGRAIATELAKQGAKVVGTATSESGAVAITEYLAALGPEA--GRGAVLN 66 ++ALVTG G+G AI +LA G +VV T S S A E+LA + R + Sbjct: 3 RLALVTGGMGGLGEAICIKLAALGYQVV-TTYSPSNTTA-GEWLATMKASGYDFRAYPCD 60 Query: 67 VNDAQASVALVEQVQKEFGALSILVNNAGITQDQLAMRMKEEEWDSVIATNLTAVGRLSR 126 V+D ++ V ++KE G + +LVNNAGIT+D +M++ +WD+V+ TNL +V +++ Sbjct: 61 VSDYDSAQQCVALIKKEIGEIDVLVNNAGITRDMTFKKMEKTDWDAVMGTNLDSVFNMTK 120 Query: 127 AVLRGMMKARSGRIINITSVVGEAGNPGQMNYAAAKAGVAGMSRALAREVGSRNITVNCV 186 V GM++ GRIINI+SV + G GQ NY+AAKAG+ G ++ALA EV + +TVN + Sbjct: 121 PVCDGMVERGWGRIINISSVNAQKGAFGQTNYSAAKAGMHGFTKALALEVARKAVTVNTI 180 Query: 187 APGFIDTDMTKALSEQ-QSAAILQQIPLARLGAAEEIAYAVAFLASPQAAYITGTTLNVN 245 +PG+I T M A+ + I+ QIP+ RLG EE+A VA+LAS +AA++TG + +N Sbjct: 181 SPGYIGTKMVTAIPQDVLDTKIVPQIPMGRLGKPEEVAGLVAYLASDEAAFVTGANIAIN 240 Query: 246 GGMYM 250 GG +M Sbjct: 241 GGQHM 245 >gi|134095523|ref|YP_001100598.1| 3-oxoacyl-[acyl-carrier-protein] reductase [Herminiimonas arsenicoxydans] Length = 240 Score = 176 bits (446), Expect = 9e-46, Method: Compositional matrix adjust. Identities = 102/242 (42%), Positives = 138/242 (57%), Gaps = 5/242 (2%) Query: 9 QVALVTGASRGIGRAIATELAKQGAKVVGTATSESGAVAITEYLAALGPEAGRGAVLNVN 68 + ALV+G +RG+G AIA L G V T A E+ +V+ Sbjct: 3 KTALVSGGTRGLGAAIAIYLRSAGYAV--AVTYHHNADTAAEFRKNTSIPV---FCWDVS 57 Query: 69 DAQASVALVEQVQKEFGALSILVNNAGITQDQLAMRMKEEEWDSVIATNLTAVGRLSRAV 128 D + QV+ + G + ILVNNAGIT+D + M +W VI TNL +V +SR V Sbjct: 58 DYAQCQEGIRQVELDVGPIDILVNNAGITRDAVLHHMTPGQWIEVINTNLGSVFNMSRNV 117 Query: 129 LRGMMKARSGRIINITSVVGEAGNPGQMNYAAAKAGVAGMSRALAREVGSRNITVNCVAP 188 + GM + GRIINI+SV GE G GQ NYAAAKAG+ G +++LA E +NITVN +AP Sbjct: 118 IEGMRERNFGRIINISSVNGERGQIGQANYAAAKAGIFGFTKSLALESARKNITVNAIAP 177 Query: 189 GFIDTDMTKALSEQQSAAILQQIPLARLGAAEEIAYAVAFLASPQAAYITGTTLNVNGGM 248 G+ DTDM A+ ++ I+ IP+ LG +IA V FLA + +ITG T +VNGG Sbjct: 178 GYCDTDMVSAIPQEVLEKIVTGIPVGHLGTGSDIARLVVFLADNASGFITGATFDVNGGQ 237 Query: 249 YM 250 +M Sbjct: 238 FM 239 >gi|134096030|ref|YP_001101105.1| 3-ketoacyl-(acyl-carrier-protein) reductase [Herminiimonas arsenicoxydans] Length = 239 Score = 142 bits (359), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 99/239 (41%), Positives = 139/239 (58%), Gaps = 5/239 (2%) Query: 11 ALVTGASRGIGRAIATELAKQGAKVVGTATS-ESGAVAITEYLAALGPEAGRGAVLNVND 69 ALVTG S GIG AI LA G V+ A A AI + A G A AV ++ D Sbjct: 4 ALVTGGSGGIGAAICKRLAADGLHVIVHANRGRDKASAICTAIIADGGSA-EVAVFDITD 62 Query: 70 AQASVALVEQVQKEFGALSILVNNAGITQDQLAMRMKEEEWDSVIATNLTAVGRLSRAVL 129 A+A+ +E + E G + +LVNNAGI D + M +W SVI +L +++ + Sbjct: 63 AEATKVALETLL-EAGPVQVLVNNAGIHSDAVFPGMTSAQWHSVIDVSLHGFFNVTQPLT 121 Query: 130 RGMMKARSGRIINITSVVGEAGNPGQMNYAAAKAGVAGMSRALAREVGSRNITVNCVAPG 189 M++ R GRIIN++S+ GN GQ+NY+AAK + +++LA E+ SR ITVN VAPG Sbjct: 122 MPMIRTRWGRIINVSSIAAVTGNRGQVNYSAAKGALHSATKSLALELASRGITVNAVAPG 181 Query: 190 FIDTDMTKALSEQQSAAILQQIPLARLGAAEEIAYAVAFLASPQAAYITGTTLNVNGGM 248 I T M + + + AI +P+ R G EE+A + FLASP AAYI+G +++NGGM Sbjct: 182 IIATGMIEEAFDDK--AIQNIVPMKRAGKPEEVADLIGFLASPNAAYISGQIISINGGM 238 >gi|134095010|ref|YP_001100085.1| D-beta-hydroxybutyrate dehydrogenase [Herminiimonas arsenicoxydans] Length = 264 Score = 112 bits (280), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 78/263 (29%), Positives = 127/263 (48%), Gaps = 17/263 (6%) Query: 1 MSAQNLQGQVALVTGASRGIGRAIATELAKQGAKVVGTATSESGAVAITEYLAALGPEAG 60 M LQG+ AL+TG++ GIG IA LA+QGA +V ++ +A + A L + G Sbjct: 1 MQNTTLQGKTALITGSTSGIGLGIARALAQQGAHIVLNGFGDANEIAALQ--AGLTQDYG 58 Query: 61 RGAVLNVND---AQASVALVEQVQKEFGALSILVNNAGITQDQLAMRMKEEEWDSVIATN 117 + + D Q A+++ +FG++ ILVNNAGI E+WD++IA N Sbjct: 59 VQSTYHPADMSRPQEIAAMMQFAAAKFGSVDILVNNAGIQHVADIEDFPVEKWDAIIAIN 118 Query: 118 LTAVGRLSRAVLRGMMKARSGRIINITSVVGEAGNPGQMNYAAAKAGVAGMSRALAREVG 177 L++ +R L M + GRIINI S G G+ + Y AAK G+ G+S+ A E Sbjct: 119 LSSAFHTTRLALPAMKEKNWGRIINIASAHGLVGSAQKSAYVAAKHGIVGLSKVTALENA 178 Query: 178 SRNITVNCVAPGFIDTDMTK------------ALSEQQSAAILQQIPLARLGAAEEIAYA 225 +T N + PG++ T + + + + + + ++ P E++ Sbjct: 179 QTGVTCNAICPGWVLTPLVQKQVDVRAANEDVSNDDAKKGLLAEKQPSGEFVTPEQLGAL 238 Query: 226 VAFLASPQAAYITGTTLNVNGGM 248 FL S A + G +++GG Sbjct: 239 AVFLCSEAANQVRGAAWSMDGGW 261 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.314 0.127 0.339 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 419,907 Number of extensions: 15995 Number of successful extensions: 124 Number of sequences better than 1.0e-08: 12 Number of HSP's gapped: 105 Number of HSP's successfully gapped: 12 Length of query: 251 Length of database: 1,000,347 Length adjustment: 79 Effective length of query: 172 Effective length of database: 740,042 Effective search space: 127287224 Effective search space used: 127287224 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 127 (53.5 bits)