BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1786.p
         (212 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095271|ref|YP_001100346.1| putative Maf-like protein [Herm...   304   3e-84
gi|134093810|ref|YP_001098885.1| hypothetical protein HEAR0552 [...    70   9e-14

>gi|134095271|ref|YP_001100346.1| putative Maf-like protein
           [Herminiimonas arsenicoxydans]
          Length = 204

 Score =  304 bits (778), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 146/196 (74%), Positives = 164/196 (83%)

Query: 10  QVRLILGSSSIYRKELLSRLGLPFETMAPDIDESPQPGESPQATALRLAHQKAGAIAARV 69
           Q RLILGSSSIYRKELL+RLG PFE M P+IDE+  PGESP+ATALRLA QKA  IAA+V
Sbjct: 7   QARLILGSSSIYRKELLARLGFPFEVMVPNIDETAMPGESPEATALRLAQQKAAVIAAKV 66

Query: 70  GAALVIGSDQVATLDGQQIGKPGNHANALKQLQWMRGREVIFHTALCLWDGRRADAATAA 129
              +VIGSDQVATLDG+QIGKPG H NAL+QLQ MRGR+V FHTALCL+DGR   A+   
Sbjct: 67  PNTIVIGSDQVATLDGEQIGKPGTHENALRQLQKMRGRKVTFHTALCLFDGRTGIASPQI 126

Query: 130 QVCNVQTLVRFRNLDDAELEAYLRIEQPYDCAGSAKNEGLGIAILDSIHSDDPTALTGLP 189
           Q+ N+QT V FR+L DAEL+AYLRIEQPYDCAGSAKNEGLGI I++ I S DPTALTGLP
Sbjct: 127 QLENIQTFVTFRHLPDAELDAYLRIEQPYDCAGSAKNEGLGITIIEKIESSDPTALTGLP 186

Query: 190 LIALTSMLRQAGVKFF 205
           LI LTSMLRQAG+ FF
Sbjct: 187 LITLTSMLRQAGIAFF 202


>gi|134093810|ref|YP_001098885.1| hypothetical protein HEAR0552
           [Herminiimonas arsenicoxydans]
          Length = 206

 Score = 70.1 bits (170), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 92/212 (43%), Gaps = 20/212 (9%)

Query: 7   NPSQVRLILGSSSIYRKELLSRLGLPFETM--------APDIDESPQPGESPQATALRLA 58
            P   ++ L S S  R+ELL ++G+ FE +         P++ E  QP E  +    R+ 
Sbjct: 2   KPLPHKIYLASKSPRRRELLRQIGVEFELLLLRDHTPRGPEVSEIVQPNERAEDYVARVT 61

Query: 59  HQKAGAIAA-----RVGAALVIGSDQVATLDGQQIGKPGNHANALKQLQWMRGREVIFHT 113
            +KA          ++    ++ +D    LDG+ +GKP N A A+  +Q + G      T
Sbjct: 62  LEKAAFAQKTMWWRKLPLRPILAADTTVVLDGRILGKPANTAEAVAMMQALSGHTHQVLT 121

Query: 114 ALCLWDGRRADAATAAQVCNVQTLVRFRNLDDAELEAYLRIEQPYDCAGSAKNEGLGIAI 173
            + +  G +    T       ++ V F  L D  + AY    +PYD AG    +G     
Sbjct: 122 HVAVLHGEQIYQTTQ------RSDVAFTKLSDEMIRAYCATAEPYDKAGGYGIQGQAALF 175

Query: 174 LDSIHSDDPTALTGLPLIALTSMLRQAGVKFF 205
           +  I +   + + GLPL     +L QAG++  
Sbjct: 176 IQDI-AGSYSGIMGLPLFETGKLLEQAGLRIL 206


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.318    0.133    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 376,285
Number of extensions: 13262
Number of successful extensions: 54
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 52
Number of HSP's successfully gapped: 2
Length of query: 212
Length of database: 1,000,347
Length adjustment: 78
Effective length of query: 134
Effective length of database: 743,337
Effective search space: 99607158
Effective search space used: 99607158
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 127 (53.5 bits)