BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1781.p (581 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095065|ref|YP_001100140.1| hypothetical protein HEAR1864 [... 135 4e-33 gi|134096466|ref|YP_001101541.1| putative signal peptide [Hermin... 130 2e-31 gi|134096058|ref|YP_001101133.1| hypothetical protein HEAR2898 [... 129 3e-31 gi|134093674|ref|YP_001098749.1| hypothetical protein HEAR0398 [... 124 1e-29 gi|134093755|ref|YP_001098830.1| putative signaling protein [Her... 122 3e-29 >gi|134095065|ref|YP_001100140.1| hypothetical protein HEAR1864 [Herminiimonas arsenicoxydans] Length = 524 Score = 135 bits (341), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 68/169 (40%), Positives = 107/169 (63%), Gaps = 1/169 (0%) Query: 403 EALITQLQASSNTDFLTGVLNRRAFYSYAEQQLAVAQRYGRPLAVILFDIDHFKRINDSF 462 E + Q+ D LTG LNRR E++LA A+R G PL + + D+D FK+IND + Sbjct: 352 ETKLEQMSELVREDQLTGSLNRRGLEDIFERELARAERRGTPLCIAMLDLDDFKKINDKY 411 Query: 463 GHQAGDAILVGAAQCVAQLLRKVDVLARYGGEEFIILLPESGLEQAAAVAEKLRAALQER 522 GH AGD L+ + + + LR +DV+AR+GGEEF+I+LP++G+++A +L+ L ++ Sbjct: 412 GHSAGDEALIHLVRVIKETLRSMDVIARFGGEEFLIVLPDTGMDEAVQTVTRLQRELTKQ 471 Query: 523 VFDIEAGQQIRLSASFGVAGLDDHEALDRLTKRADLALYRAKRLGRNRV 571 +F + ++ ++ S GVA ++ E + +RAD ALY AKR G+NRV Sbjct: 472 IF-MHNHTRLLMTFSAGVALRNEREDQRAMIERADKALYEAKRTGKNRV 519 >gi|134096466|ref|YP_001101541.1| putative signal peptide [Herminiimonas arsenicoxydans] Length = 492 Score = 130 bits (327), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 73/164 (44%), Positives = 102/164 (62%), Gaps = 1/164 (0%) Query: 408 QLQASSNTDFLTGVLNRRAFYSYAEQQLAVAQRYGRPLAVILFDIDHFKRINDSFGHQAG 467 +L+ + TD LTG+LNR+AF +Q + ++R PL+ ILFDID FK +ND+ GH AG Sbjct: 318 RLEQIAGTDTLTGLLNRQAFEIVFQQAILDSERRRIPLSAILFDIDFFKMVNDNHGHLAG 377 Query: 468 DAILVGAAQCVAQLLRKVDVLARYGGEEFIILLPESGLEQAAAVAEKLRAALQERVFDIE 527 D IL A +R+ D++ R+GGEEF++LL + LEQA A+AEK+R+ + F++ Sbjct: 378 DRILQSIAAITKNAVRESDIVTRWGGEEFLVLLKDCPLEQATALAEKIRSMIAGHDFELP 437 Query: 528 AGQQIRLSASFGVAGLDDHEALDRLTKRADLALYRAKRLGRNRV 571 A + L+ S GVA E RAD ALY+AK GRNRV Sbjct: 438 AS-ALHLTVSLGVAEYAYRETWLSFFGRADTALYQAKSEGRNRV 480 >gi|134096058|ref|YP_001101133.1| hypothetical protein HEAR2898 [Herminiimonas arsenicoxydans] Length = 314 Score = 129 bits (325), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 72/171 (42%), Positives = 106/171 (61%), Gaps = 7/171 (4%) Query: 408 QLQASSNTDFLTGVLNRRAFYSYAEQQLAVAQRYGRPLAVILFDIDHFKRINDSFGHQAG 467 +LQ TD LTGV NRR +++ QR+G L+ + D+D FK++ND++GHQ G Sbjct: 140 RLQHIGLTDPLTGVNNRRYVERRLLEEVGRTQRHGHTLSAMYIDLDFFKKVNDNYGHQGG 199 Query: 468 DAILVGAAQCVAQLLRKVDVLARYGGEEFIILLPESGLEQAAAVAEKLRAALQERVFDIE 527 D +L A + LR D L R+GGEEF++LL ++G+E A AVAE++R+++ R + Sbjct: 200 DEVLREVAARIKAELRLSDALGRFGGEEFVVLLIDAGMEAALAVAERMRSSIANRPLVLS 259 Query: 528 AGQQIRLSASFGVAGLDDHEALD-------RLTKRADLALYRAKRLGRNRV 571 +G+Q+RLS S GV+ L E D +L +AD ALY AK+ GRN+V Sbjct: 260 SGEQLRLSVSIGVSTLQAIERKDEVATIAQQLLAKADQALYLAKQGGRNKV 310 >gi|134093674|ref|YP_001098749.1| hypothetical protein HEAR0398 [Herminiimonas arsenicoxydans] Length = 475 Score = 124 bits (311), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 69/179 (38%), Positives = 105/179 (58%), Gaps = 10/179 (5%) Query: 397 SLAKEREALITQLQASSNTDFLTGVLNRRAFYSYAEQQLAVAQRYGRPLAVILFDIDHFK 456 +L ++RE L+ ++ D LTG NRR F + + AVA R G PL+V DIDHFK Sbjct: 297 NLGRQRE-----LEEKTHRDVLTGAHNRRYFDEAFKHEFAVASRQGWPLSVAFLDIDHFK 351 Query: 457 RINDSFGHQAGDAILVGAAQCVAQLLRKVDVLARYGGEEFIILLPESGLEQAAAVAEKLR 516 ++ND++GH AGD L+ ++ +A +R D+ RYGGEEF++L P + E+A V ++R Sbjct: 352 QVNDTYGHAAGDKALIALSRIIATQIRGSDIFVRYGGEEFVLLFPGTVAEEALIVLNRIR 411 Query: 517 AALQERVFDIEAGQQIRLSASFGVA-GLDD---HEALDRLTKRADLALYRAKRLGRNRV 571 A+ + L+ S G+A +D+ HE + L + AD ALY AK+ GRN++ Sbjct: 412 QAVASYCHTYDTA-TFHLTISAGLAFHMDEDMKHETAEGLLRTADNALYTAKQNGRNQI 469 >gi|134093755|ref|YP_001098830.1| putative signaling protein [Herminiimonas arsenicoxydans] Length = 258 Score = 122 bits (307), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 73/179 (40%), Positives = 99/179 (55%), Gaps = 7/179 (3%) Query: 394 ERTSLAKEREALITQLQASSNTDFLTGVLNRRAFYSYAEQQLAVAQRYGRPLAVILFDID 453 E +L + E L ++L + D LTGVLNR A + AE L PL++I+ DID Sbjct: 62 ELNTLNFKLEQLTSELDYKARHDNLTGVLNRGAVFDQAEHYLK-----SNPLSLIVLDID 116 Query: 454 HFKRINDSFGHQAGDAILVGAAQCVAQLLRKVDVLARYGGEEFIILLPESGLEQAAAVAE 513 FKRIND FGH GDA+L + + L V + R GGEEF +LLP L+ A +AE Sbjct: 117 FFKRINDEFGHPTGDAVLRELVKKLKSSLNGVGEIGRVGGEEFTVLLPNISLDDAIEIAE 176 Query: 514 KLRAALQERVFDIEAGQQIRLSASFGVAGLDDHEALDRLTKRADLALYRAKRLGRNRVE 572 +R A+ F + ++ASFG++ D + + RAD ALY+AK GRNRVE Sbjct: 177 NVRLAIAAETF--TCFPRPHVTASFGISWSDTNCDFENAYGRADAALYKAKHNGRNRVE 233 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.323 0.136 0.374 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 927,407 Number of extensions: 35018 Number of successful extensions: 223 Number of sequences better than 1.0e-08: 31 Number of HSP's gapped: 187 Number of HSP's successfully gapped: 31 Length of query: 581 Length of database: 1,000,347 Length adjustment: 87 Effective length of query: 494 Effective length of database: 713,682 Effective search space: 352558908 Effective search space used: 352558908 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 131 (55.1 bits)