BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1780.p (630 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094257|ref|YP_001099332.1| hypothetical protein HEAR1023 [... 807 0.0 gi|134095594|ref|YP_001100669.1| EAL domain-containing protein [... 110 2e-25 gi|134094556|ref|YP_001099631.1| hypothetical protein HEAR1331 [... 94 1e-20 gi|134096143|ref|YP_001101218.1| hypothetical protein HEAR2987 [... 91 2e-19 gi|134094165|ref|YP_001099240.1| putative sensor/regulator prote... 87 3e-18 >gi|134094257|ref|YP_001099332.1| hypothetical protein HEAR1023 [Herminiimonas arsenicoxydans] Length = 611 Score = 807 bits (2085), Expect = 0.0, Method: Compositional matrix adjust. Identities = 377/585 (64%), Positives = 469/585 (80%) Query: 30 ADDPMLSLLHEIIAQRKLSALFQPIVRMRNGEILGYEGLIRGPSNTPLHSPLSLFKVART 89 ADD + L EII R+L+ LFQPI+RM++GEI+GYEGLIRGPS++PLHSPL+LFKVAR+ Sbjct: 8 ADDYLAQRLREIILHRQLTPLFQPIIRMQSGEIIGYEGLIRGPSDSPLHSPLNLFKVARS 67 Query: 90 HNLSVQMEYLCRHIVLTRFAQLGLQGNLFLNVSPGALMQPEAIQGETLRYLEKLGVNPQR 149 NLSV++E+LCR I L +FA+L L G LFLNVSP L+QP+ GETL Y+ ++G+NP+R Sbjct: 68 CNLSVEVEHLCRRITLEKFAELQLPGRLFLNVSPECLVQPDVRHGETLGYIHEVGINPER 127 Query: 150 IIIELTENEPTYDYALLRNAAMHYRDMGFQIAIDDLGEGFSSLRLWSELQPEYVKVDMHF 209 +IIELTE+ PTYDY LLR A HYR MGF+IAIDDLGEGFSSLRLWSEL+PEYVK+DMHF Sbjct: 128 VIIELTESHPTYDYELLREAVTHYRAMGFRIAIDDLGEGFSSLRLWSELRPEYVKIDMHF 187 Query: 210 VQGINHDPMKLQFVRSIQEIAEKSGSIVIAEGIESQAELLTIRDLGIACGQGYHISRPLP 269 VQGINHDP+KLQFVRSIQEIAEKSG+IVIAEGIE+ AELL IRDLG++ GQGY I+RP Sbjct: 188 VQGINHDPIKLQFVRSIQEIAEKSGTIVIAEGIETDAELLMIRDLGVSYGQGYKIARPHA 247 Query: 270 EPPMSIPDDVSKTLRRDKVPLAANKYGPGKRSATVAKLLRETQYVSPEVTNDAAYDMFVN 329 P ++ D+ LR + V + ++ G G + T KLLR Q VSPEV N+ Y+MF + Sbjct: 248 HPATALSADLRNLLRHNGVAVYPHEAGRGHKILTALKLLRSVQSVSPEVHNNRIYEMFNS 307 Query: 330 DPQLQALPVVSNGLPIGLINRYSMVERFARLYGRELYGKRSCAFFMDPNPILTEQDTSLQ 389 DP L+ +PVVSNGLP+GLI R ++++RFAR Y REL+GK+SC FMD NP++T+++T+L Sbjct: 308 DPTLEVIPVVSNGLPVGLITRANLIDRFARPYLRELHGKKSCTLFMDSNPLITDKNTALH 367 Query: 390 DLSNLLVQAESHHLSNGFIITDRGQYMGLGTGHDLLREITQMQIDAARHANPLTQLPGNV 449 LS ++V A+ HHL NGFIITD GQYMG+G HDL+REITQMQI AAR+ANPLT LPGNV Sbjct: 368 ALSQIIVDADRHHLFNGFIITDAGQYMGMGNAHDLMREITQMQISAARYANPLTLLPGNV 427 Query: 450 PINDHIEYLLHSGVEFCICYCDLDQFKPFNDVYGYRKGDDMIQATGRLLQQACDPNLDFV 509 PI++HI+ LL +G FC CY DLD FKP+NDVYGYRKGDD+++ TG++L CDP DFV Sbjct: 428 PIDEHIDRLLENGTRFCACYVDLDHFKPYNDVYGYRKGDDILRVTGKILSGHCDPQRDFV 487 Query: 510 GHIGGDDFLIMFQSEDWEKRCRTMLDNFTAETRGLYYDEDVQRGGYFTEDRQGNRIFHPL 569 GHIGGDDF+I+FQSEDWE+RCR +LD F + Y +ED RGGY +EDR+G ++FH L Sbjct: 488 GHIGGDDFIILFQSEDWEQRCRAILDAFASAAPDFYSEEDRLRGGYVSEDRRGEKVFHTL 547 Query: 570 VSVSLGAVKIEPSQYSSPHQIASAATRAKKQAKKIQGNSLFIERR 614 VS+SLG VK+EP QY S H+IA+A AK+QAKKI GNSLFI+RR Sbjct: 548 VSISLGLVKVEPGQYLSHHKIATATAEAKQQAKKIPGNSLFIDRR 592 >gi|134095594|ref|YP_001100669.1| EAL domain-containing protein [Herminiimonas arsenicoxydans] Length = 223 Score = 110 bits (275), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 71/211 (33%), Positives = 102/211 (48%), Gaps = 4/211 (1%) Query: 57 MRNGEILGYEGLIRGPSNTPLHSPLSLFKVARTHNLSVQMEYLCRHIVLTRFAQLGLQGN 116 +R I +E L+RGP+ +S LS A ++ + CR + A LG++ Sbjct: 3 VRTRSIYAHEALVRGPNGESAYSVLSQVTDANRYSF----DQACRVEAIRGAAALGMKEL 58 Query: 117 LFLNVSPGALMQPEAIQGETLRYLEKLGVNPQRIIIELTENEPTYDYALLRNAAMHYRDM 176 L +N P A+ +PEA T ++II E+TE E D L N YR Sbjct: 59 LSINFLPNAVYRPEACIRSTFEAARLYDFPIEQIIFEVTEGEQVTDRPHLVNIFREYRRF 118 Query: 177 GFQIAIDDLGEGFSSLRLWSELQPEYVKVDMHFVQGINHDPMKLQFVRSIQEIAEKSGSI 236 GF+ AIDD G G++ L L ++ QP+ +K+DM V+GI+ K V I I Sbjct: 119 GFRTAIDDFGAGYAGLGLLADYQPDIIKIDMELVRGIDSSKPKQAIVHGIVSICAALNVR 178 Query: 237 VIAEGIESQAELLTIRDLGIACGQGYHISRP 267 V+AEGIE+ AE + GI QGY +P Sbjct: 179 VLAEGIETSAERDFLYSAGIDLMQGYLFCKP 209 >gi|134094556|ref|YP_001099631.1| hypothetical protein HEAR1331 [Herminiimonas arsenicoxydans] Length = 859 Score = 94.4 bits (233), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 74/244 (30%), Positives = 128/244 (52%), Gaps = 12/244 (4%) Query: 34 MLSLLHEIIAQRKLSALFQPIVRMRNGEILGYEGLIRG--PSNTPLHSPLSLFKVARTHN 91 +L+ L + IAQ +L +QP + + +G+++G E L+R P + SP +A Sbjct: 606 VLNALRQAIAQEQLHVHYQPQISLISGDVIGAEALLRWHHPELGNI-SPAEFIPIAEESG 664 Query: 92 LSVQM-EYLCRHIVL--TRFAQLGLQGNLFLNVSPGAL-MQPEAIQGETLRYLEKLGVNP 147 L +Q+ E++ R V ++ QLGL L + V+ A+ + + ++ L++ P Sbjct: 665 LILQIGEWVLRVAVAQAKKWHQLGLD-KLIIAVNLSAVQFRHAGLPNLVMQILKEEDFPP 723 Query: 148 QRIIIELTENEPTYD--YALLRNAAMHYRDMGFQIAIDDLGEGFSSLRLWSELQPEYVKV 205 Q + +ELTE +D A+ ++H R G +++IDD G G+SSL + + +K+ Sbjct: 724 QYLELELTEGVAMHDPQGAIAMMNSLHER--GVRMSIDDFGTGYSSLSYLKQFKAYKLKI 781 Query: 206 DMHFVQGINHDPMKLQFVRSIQEIAEKSGSIVIAEGIESQAELLTIRDLGIACGQGYHIS 265 D FV+ I+ D V +I +A+ G IAEG+E+ + +R+ G QGYH S Sbjct: 782 DQSFVRDISTDAEDKAIVSAIIGMAKNLGLQTIAEGVETAEQQAFLREEGCHEAQGYHYS 841 Query: 266 RPLP 269 +PLP Sbjct: 842 KPLP 845 >gi|134096143|ref|YP_001101218.1| hypothetical protein HEAR2987 [Herminiimonas arsenicoxydans] Length = 558 Score = 90.9 bits (224), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 71/230 (30%), Positives = 113/230 (49%), Gaps = 9/230 (3%) Query: 46 KLSALFQPIVRMRNGEILGYEGLIRGPSNTPLHSPLSLF----KVARTHNLSVQ--MEYL 99 +LS +QP + ++ GEI G E L+R + P +F + + NL + +E Sbjct: 312 QLSMHYQPKISIKTGEIHGVEALMRWNHPERGNIPPGIFIPRAEQSTLINLITEFALEQA 371 Query: 100 CRHIVLTRFAQLGLQGNLFLNVSPGALMQPEAIQGETLRYLEKLGVNPQRIIIELTENEP 159 + IV R + L + +N+SP L+QP L+ L++ V+ Q + +E+TE Sbjct: 372 MKQIVEWRENDIHLA--IAVNISPRNLLQP-GFSDLVLQLLQRYDVSGQFLELEVTEGAL 428 Query: 160 TYDYALLRNAAMHYRDMGFQIAIDDLGEGFSSLRLWSELQPEYVKVDMHFVQGINHDPMK 219 D A + + I+IDD G G+SSL+ +L +K+D FV+ + D Sbjct: 429 MTDIAHSISELSRLANAKITISIDDFGTGYSSLQYLHQLPISLIKIDQSFVRRLPDDKGA 488 Query: 220 LQFVRSIQEIAEKSGSIVIAEGIESQAELLTIRDLGIACGQGYHISRPLP 269 + V + +A K G IAEG+E+Q + DLG QG+ ISRPLP Sbjct: 489 IHIVEAAVTLAHKMGMRTIAEGVENQRAYTLLADLGCDIAQGFMISRPLP 538 >gi|134094165|ref|YP_001099240.1| putative sensor/regulator protein [Herminiimonas arsenicoxydans] Length = 818 Score = 86.7 bits (213), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 65/233 (27%), Positives = 111/233 (47%), Gaps = 16/233 (6%) Query: 46 KLSALFQPIVRMRNGEILGYEGLIRGPS-NTPLHSPLSLFKVARTHNLSV-----QMEYL 99 +L ++QP + +R+G ++G E LIR L +P+ +A + L + +E Sbjct: 576 ELFLVYQPQIDLRDGTVIGMEALIRWQHPKRGLIAPMDFIPMAECNGLIIPIGIWVLETA 635 Query: 100 CRHIVLTRFAQLGLQG----NLFLNVSPGALMQPEAIQGETLRYLEKLGVNPQRIIIELT 155 CRH + QL +G + +N+S L ++ +E +G++P + +E+T Sbjct: 636 CRHNL-----QLQKEGLPPIRVAINLSARQLSDRNFVES-VQSVIEAIGLDPHYLELEVT 689 Query: 156 ENEPTYDYALLRNAAMHYRDMGFQIAIDDLGEGFSSLRLWSELQPEYVKVDMHFVQGINH 215 E+ ++ + MG Q+++DD G GFSSL + +K+D F+ + Sbjct: 690 ESMVMHNVEDVVVTLNDLNKMGIQLSLDDFGTGFSSLAYLKRFPIDRLKIDQSFIFNCDS 749 Query: 216 DPMKLQFVRSIQEIAEKSGSIVIAEGIESQAELLTIRDLGIACGQGYHISRPL 268 DP ++I +A VIAEG+E L ++ G GQGY ISRPL Sbjct: 750 DPGDAIIAQTIIALAHGLKIKVIAEGVEKSEHLSFLKKNGCDEGQGYFISRPL 802 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.321 0.138 0.409 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 1,231,960 Number of extensions: 51949 Number of successful extensions: 212 Number of sequences better than 1.0e-08: 17 Number of HSP's gapped: 205 Number of HSP's successfully gapped: 17 Length of query: 630 Length of database: 1,000,347 Length adjustment: 87 Effective length of query: 543 Effective length of database: 713,682 Effective search space: 387529326 Effective search space used: 387529326 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 132 (55.5 bits)