BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1779.p
         (433 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094256|ref|YP_001099331.1| seryl-tRNA synthetase [Herminii...   766   0.0  

>gi|134094256|ref|YP_001099331.1| seryl-tRNA synthetase
           [Herminiimonas arsenicoxydans]
          Length = 431

 Score =  766 bits (1978), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 365/431 (84%), Positives = 395/431 (91%), Gaps = 2/431 (0%)

Query: 1   MIDIQLLRKDIDNVAARLAARKFVLDVAGFNALEAERKQIQTRTEELQGKRNSLSKQIGM 60
           MIDIQLLRKDI+ VAARLA RKF LDV  FNALEAERKQIQ+ TEELQ +RN+LSKQIG 
Sbjct: 1   MIDIQLLRKDIETVAARLAGRKFQLDVNTFNALEAERKQIQSGTEELQNRRNTLSKQIGA 60

Query: 61  LKGKGEDASAVMAEVNGIGDELKASATRLDEVQQQMTLFLQAVPNLPHESVPVGNDENGN 120
           LKGKGED SAVMAEV GIGDELKASA RLD +Q +++ F+ A+PNLPHESVPVG DE  N
Sbjct: 61  LKGKGEDTSAVMAEVAGIGDELKASAARLDVLQAEISKFMLAIPNLPHESVPVGKDEEDN 120

Query: 121 VELRKVGTPRQFDFEIKDHVDVGAPLGLDFDTATKLTGSRFAVLKGGIARLHRALAQFML 180
           VELRKVGTPR FDFE++DHVD+GA LGLDFD A K+TGSRF+V+KGGIARLHRALAQFML
Sbjct: 121 VELRKVGTPRAFDFEVRDHVDIGAALGLDFDVAAKITGSRFSVMKGGIARLHRALAQFML 180

Query: 181 NTHTMEHGYTECYTPYIVNADSLRGTGQLPKFEADLFAAKKGGQEGEAENAALYLIPTAE 240
           +THT EHGYTECYTPYIVNADSL+GTGQLPKFEADLFA KKGGQEGE E  ALYLIPTAE
Sbjct: 181 DTHTEEHGYTECYTPYIVNADSLQGTGQLPKFEADLFAVKKGGQEGEGE--ALYLIPTAE 238

Query: 241 VPLTNFVRDEIVAGDALPMKFTAHSPCFRSEAGSYGRDTRGMIRQHQFDKVEMVQIVHPE 300
           VPLTN VRDEI+A DALP++ TAHSPCFRSEAGSYGRDTRGMIRQHQFDKVEMVQ+VHPE
Sbjct: 239 VPLTNIVRDEILAADALPVRMTAHSPCFRSEAGSYGRDTRGMIRQHQFDKVEMVQVVHPE 298

Query: 301 QSYAALEEMLGHAETILKKLGLPYRVITLCTGDMGFGAAKTYDIEVWLPAQNTYREISSV 360
           +SY AL+EM GHAE ILKKLGLPYRVITLCTGDMGFGA+KTYD+EVWLPAQNTYREISSV
Sbjct: 299 KSYEALDEMCGHAENILKKLGLPYRVITLCTGDMGFGASKTYDLEVWLPAQNTYREISSV 358

Query: 361 SNCEAFQARRMQARFRNAQGKPELLHTLNGSGLAVGRTLVAVLENYQQADGSVDIPEVLQ 420
           SNCEAFQARRMQARFRNAQGKPEL HTLNGSGLAVGRTLVAVLENYQQADGSV IPEVL 
Sbjct: 359 SNCEAFQARRMQARFRNAQGKPELTHTLNGSGLAVGRTLVAVLENYQQADGSVIIPEVLH 418

Query: 421 PYMGGVSKLVP 431
           PYMGG+++L+P
Sbjct: 419 PYMGGLTRLLP 429


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.318    0.135    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 808,527
Number of extensions: 33394
Number of successful extensions: 86
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 85
Number of HSP's successfully gapped: 1
Length of query: 433
Length of database: 1,000,347
Length adjustment: 84
Effective length of query: 349
Effective length of database: 723,567
Effective search space: 252524883
Effective search space used: 252524883
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)