BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1777.p (313 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095507|ref|YP_001100582.1| putative transcriptional regula... 177 6e-46 gi|134094015|ref|YP_001099090.1| LysR family transcriptional reg... 144 8e-36 gi|134094924|ref|YP_001099999.1| transcriptional regulator [Herm... 139 2e-34 gi|134093609|ref|YP_001098684.1| putative transcriptional regula... 136 1e-33 gi|134094407|ref|YP_001099482.1| transcriptional regulator [Herm... 109 2e-25 >gi|134095507|ref|YP_001100582.1| putative transcriptional regulator [Herminiimonas arsenicoxydans] Length = 287 Score = 177 bits (449), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 99/290 (34%), Positives = 162/290 (55%), Gaps = 3/290 (1%) Query: 13 MAVFAKVVETGSFSEAARQLGATPSAISRAIARLEKALGTQLLQRTTRKLRLSESGREIH 72 M F VVE SF+ A +L + + +S+ + LE LGT+LL RTTR+L L+ESG + Sbjct: 1 MKTFVAVVEAESFTAAGARLDISKALVSKYVGILEDHLGTRLLNRTTRRLSLTESGLAYY 60 Query: 73 ERCRDMLHAAQAVLAVSGSFEAVPQGQVRVSVPKAVGRYLVHPHVPDFLASYPEVDVLLR 132 ERC +L V+ A+P+G ++V++P + G + P + +++ YPEV + + Sbjct: 61 ERCLQILADVDEAEQVAAQSAAMPRGTLKVAMPVSFGTVRIAPLLTEYMRRYPEVRLDIA 120 Query: 133 LEDRYMDLIDDQVDLAIRITDKPPPGLMGRRLMRIDHLLCATPAYLAAHGTPTHPQALKA 192 L DR +DLI+D DLAIR+ + P GL+ R+L +LCA+PAYL HG P P+ LK Sbjct: 121 LADRRVDLIEDGYDLAIRVGNLPESGLIARKLATDRIVLCASPAYLQVHGAPQTPEDLKQ 180 Query: 193 HSCIYLGEAPADAQWRFRRHGKAVHVEVRGRYAANHTGVRLDAVLRHIGIGSLPYFIARP 252 H+C+ + + +W F + V V G AN+ + A L G+ P+FI Sbjct: 181 HACLNYSYSSSGDEWVFGKGKTRAAVRVDGPMRANNGDMLRLAALDGAGLIWQPHFIVAD 240 Query: 253 ALEAGSIVQVLPQWTFRTHYCGDLWALYPATRHLPPRLGAFVNFLAQRLA 302 ++AG +V+++ + ++A+YP+ +HL ++ FV++L +A Sbjct: 241 DVQAGRLVELMKD---ESDTELGIYAIYPSRKHLSAKVRTFVDYLVACMA 287 >gi|134094015|ref|YP_001099090.1| LysR family transcriptional regulator [Herminiimonas arsenicoxydans] Length = 305 Score = 144 bits (362), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 97/293 (33%), Positives = 147/293 (50%), Gaps = 8/293 (2%) Query: 10 LNEMAVFAKVVETGSFSEAARQLGATPSAISRAIARLEKALGTQLLQRTTRKLRLSESGR 69 ++++A FA +V+ GS + AA++LG TP ++S+ +A +E L +LL RTTR++ L+ G Sbjct: 4 ISDLAFFALLVKRGSLAAAAQELGVTPPSVSKRLAGIEARLRVRLLNRTTRRISLTPEG- 62 Query: 70 EIHERCRDMLHAAQAVLA--VSGSFEAVPQGQVRVSVPKAVGRYLVHPHVPDFLASYPEV 127 EI+ L A L +SG +G +++S GR + P + F YPEV Sbjct: 63 EIYLADGARLVAELEALEQRISGG-NVTAKGLLKISATFGFGRRHITPQLSAFARLYPEV 121 Query: 128 DVLLRLEDRYMDLIDDQVDLAIRITDKPPPGLMGRRLMRIDHLLCATPAYLAAHGTPTHP 187 DV L L DR ++L++ D IR P L R++ L+CA+PAYL HG P P Sbjct: 122 DVQLHLTDRPVNLVEQGFDADIRFGQLPDARLTARKIADNRRLVCASPAYLKNHGIPLTP 181 Query: 188 QALKAHSCIYLGEAPAD-AQWRFRRHGKAVHVEVRGRYAANHTGVRLDAVLRHIGIGSLP 246 + L+ H+CI L E+ W F K V+VRG +AN L GI Sbjct: 182 RDLQKHNCILLRESDEIYGSWHFSSGTKQETVKVRGSLSANDGECATAWALDGQGIVVRS 241 Query: 247 YFIARPALEAGSIVQVLPQWTFRTHYCGDLWALYPATRHLPPRLGAFVNFLAQ 299 + P L +G + VL W D++ ++P HL + A V+F+ Q Sbjct: 242 EWDVAPYLRSGRLRTVLEDWQLPQ---ADIYIVFPTKNHLSAKTRALVDFMLQ 291 >gi|134094924|ref|YP_001099999.1| transcriptional regulator [Herminiimonas arsenicoxydans] Length = 293 Score = 139 bits (349), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 90/291 (30%), Positives = 145/291 (49%), Gaps = 3/291 (1%) Query: 11 NEMAVFAKVVETGSFSEAARQLGATPSAISRAIARLEKALGTQLLQRTTRKLRLSESGRE 70 +++ F V+++G+ AA+ LG T SA+SR ++RLE+ L T LL RTTR++ L++ GR Sbjct: 6 DDLKTFVAVIDSGTLGAAAQHLGQTTSAVSRGLSRLEEKLATSLLTRTTRRMELTDEGRL 65 Query: 71 IHERCRDMLHAAQAVLAVSGSFEAVPQGQVRVSVPKAVGRYLVHPHVPDFLASYPEVDVL 130 ++ R +L A P G++R+ + + PHV +F A YP++ + Sbjct: 66 FLKKARAILAAMDEAEEAIRVRRQQPSGRLRIDAAAPFILHAIVPHVAEFRALYPQITLE 125 Query: 131 LRLEDRYMDLIDDQVDLAIRITDKPPPGLMGRRLMRIDHLLCATPAYLAAHGTPTHPQAL 190 L D+ DL++ + D+AIRI + L R L L A+P YL HG PT P+ L Sbjct: 126 LTSNDQVADLLEHRTDIAIRIGNLQDSTLHARALTANPLHLLASPDYLQRHGMPTTPEQL 185 Query: 191 KAHSCIYLGEAPADAQWRFRRHGKAVHVEVRGRYAANHTGVRLDAVLRHIGIGSLPYFIA 250 H + + + W R G +A++ +R A L GI SL ++ Sbjct: 186 AGHQLLGFLQFESGNTWPIRHAGGEGLTVTPALFASSGETLRALA-LHGQGIASLADYMT 244 Query: 251 RPALEAGSIVQVLPQWTFRTHYCGDLWALYPATRHLPPRLGAFVNFLAQRL 301 R + AG +V++L + T Y + A+Y L R+ F+ FL Q+L Sbjct: 245 RDDIAAGRLVRILENYY--TGYRQQIHAVYYRNTQLSRRISCFLEFLQQKL 293 >gi|134093609|ref|YP_001098684.1| putative transcriptional regulator [Herminiimonas arsenicoxydans] Length = 301 Score = 136 bits (342), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 90/290 (31%), Positives = 137/290 (47%), Gaps = 6/290 (2%) Query: 10 LNEMAVFAKVVETGSFSEAARQLGATPSAISRAIARLEKALGTQLLQRTTRKLRLSESGR 69 L ++ F VE SF+ AA L TP + R I LEK LG +LL R+TR+L L+E G Sbjct: 4 LKQIEAFVMAVEHSSFAAAALALQVTPVMVGRRIDALEKRLGVRLLHRSTRRLALTEEGS 63 Query: 70 EIHERCRDML-HAAQAVLAVSGSFEAVPQGQVRVSVPKAVGRYLVHPHVPDFLASYPEVD 128 E CR ML QA +S V G + +S P + GR V P+ +FL +P + Sbjct: 64 VYLEHCRKMLSELDQAESTLSAGHNKVS-GHLIISAPASFGRQHVAPYAQNFLEQHPGLK 122 Query: 129 VLLRLEDRYMDLIDDQVDLAIRITDKPPPGLMGRRLMRIDHLLCATPAYLAAHGTPTHPQ 188 + L DR +DL+ + D+ IRI P + +L ++C TP Y HG P Sbjct: 123 MSFNLTDRVVDLVQEGYDMGIRIGGTIDPNFVAIKLAANKRVVCGTPDYFKKHGKPKTLD 182 Query: 189 ALKAHSCIYLG-EAPADAQWRFRRHGKAVHVEVRGRYAANHTGVRLDAVLRHIGIGSLPY 247 L H+C+ + W F GK V V +G N + + +GI Sbjct: 183 DLAKHNCLAFNLQGGQQRGWYFNHRGKTVSVRAQGSLDCNDGELLHRWMSEGLGIAWRSV 242 Query: 248 FIARPALEAGSIVQVLPQWTFRTHYCGDLWALYPATRHLPPRLGAFVNFL 297 + + LE+G++ VL + + D+ A+YP R++P ++ F++ L Sbjct: 243 WEIQSQLESGTLETVLDDFAIPEY---DIMAVYPQQRNVPAKVRLFISHL 289 >gi|134094407|ref|YP_001099482.1| transcriptional regulator [Herminiimonas arsenicoxydans] Length = 304 Score = 109 bits (272), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 76/299 (25%), Positives = 134/299 (44%), Gaps = 4/299 (1%) Query: 10 LNEMAVFAKVVETGSFSEAARQLGATPSAISRAIARLEKALGTQLLQRTTRKLRLSESGR 69 L + +F + SF EAA +LG +P AI+RA+ LE+A+G L R TR ++++E G Sbjct: 5 LEMLRLFCAAADASSFKEAAARLGTSPQAITRAVKELEEAVGELLFHRNTRGIQITEFGT 64 Query: 70 EIHERCRDMLHAAQAVLAVSGSFEAVP-QGQVRVSVPKAVGRYLVHPHVPDFLASYPEVD 128 ++ E R+M+ + + +G VR++ P +GR + + + YP + Sbjct: 65 QLAEHAREMVTGVDKLFHHTNPLSDTNLEGLVRITAPSPIGRRHLLKLLLPLIRQYPGIK 124 Query: 129 VLLRLEDRYMDLIDDQVDLAIRITDKPPPGLMGRRLMRIDHLLCATPAYLAAHGTPTHPQ 188 + L + + D++D ++D+ +RI L+ R + ++ + ATP +A G P PQ Sbjct: 125 LELGVTNLLADVVDKKIDIGVRIGPLRDSRLVARSVGKVSFFVVATPELVATRGKPITPQ 184 Query: 189 ALKAHSCIYLGEAPADAQWRFRRHGKAVHVEVRGRYAANHTGVRLDAVLRHIGIGSLPYF 248 L L + W + ++ V DAVL IG G L Sbjct: 185 DLLGLPTTALMDGNTGRIWPWYFADSQPLTLTSPTLVSDDPEVECDAVLAGIGYGQLSNH 244 Query: 249 IARPALEAGSIVQVLPQWTFRTHYCGDLWALYPATRHLPPRLGAFVNFLAQRLAEEPTL 307 A P + +G +V VL + DL+ P +P R+ + + + L++ T Sbjct: 245 QAEPHIRSGRLVTVLDDY---QPVPWDLYVYRPQRGPVPARIRLVFDRIVEILSDPSTF 300 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.323 0.137 0.413 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 602,187 Number of extensions: 25446 Number of successful extensions: 115 Number of sequences better than 1.0e-08: 9 Number of HSP's gapped: 107 Number of HSP's successfully gapped: 9 Length of query: 313 Length of database: 1,000,347 Length adjustment: 82 Effective length of query: 231 Effective length of database: 730,157 Effective search space: 168666267 Effective search space used: 168666267 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 128 (53.9 bits)