BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1772.p
         (112 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095508|ref|YP_001100583.1| ferredoxin [Herminiimonas arsen...   145   5e-37
gi|134094844|ref|YP_001099919.1| ferredoxin [Herminiimonas arsen...   141   8e-36
gi|134094047|ref|YP_001099122.1| 7-Fe ferredoxin [Herminiimonas ...   130   2e-32

>gi|134095508|ref|YP_001100583.1| ferredoxin [Herminiimonas
           arsenicoxydans]
          Length = 116

 Score =  145 bits (366), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 70/111 (63%), Positives = 79/111 (71%)

Query: 1   MPFVVTDACIQCKYTDCVNVCPMDCFVEGPNFLVIDPDGCIDCSMCVPECPVGAIYNATD 60
           M FVVT+ CIQCKYTDCV VCPMDCF+EGPNFLVI+PD CIDCSMCV ECPVGAI    +
Sbjct: 1   MTFVVTEPCIQCKYTDCVTVCPMDCFMEGPNFLVINPDECIDCSMCVAECPVGAIVGDRE 60

Query: 61  LPAALAHFEDLNAKLAKLPGWQPITQVKPPMAGHEQWKDVPDKLALLQMPP 111
           L A  AHF +LN  L+  P WQ IT  KP +  HE+W     KL+LL   P
Sbjct: 61  LAADQAHFLELNRSLSAHPDWQRITMSKPALPEHEKWARTTTKLSLLLESP 111


>gi|134094844|ref|YP_001099919.1| ferredoxin [Herminiimonas
           arsenicoxydans]
          Length = 109

 Score =  141 bits (355), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 65/107 (60%), Positives = 79/107 (73%)

Query: 1   MPFVVTDACIQCKYTDCVNVCPMDCFVEGPNFLVIDPDGCIDCSMCVPECPVGAIYNATD 60
           MPFVVT++CIQCKYTDCV VCPMDCF EGPNFL I+PD CIDCS+CVPECPV AI  A +
Sbjct: 1   MPFVVTESCIQCKYTDCVAVCPMDCFFEGPNFLAINPDECIDCSVCVPECPVNAIIGAAE 60

Query: 61  LPAALAHFEDLNAKLAKLPGWQPITQVKPPMAGHEQWKDVPDKLALL 107
           +     HF +LN  L++ P W+ I Q K P+  H +W ++ DKL LL
Sbjct: 61  ISPEQQHFVELNRTLSRHPDWKRIRQQKEPLPEHAKWAELKDKLPLL 107


>gi|134094047|ref|YP_001099122.1| 7-Fe ferredoxin [Herminiimonas
           arsenicoxydans]
          Length = 107

 Score =  130 bits (327), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 61/109 (55%), Positives = 77/109 (70%), Gaps = 2/109 (1%)

Query: 1   MPFVVTDACIQCKYTDCVNVCPMDCFVEGPNFLVIDPDGCIDCSMCVPECPVGAIYNATD 60
           M  VVTD+C+ C+YTDCV+VCP+DCF EGPNFL IDPD CIDC++CV ECPV AIY   D
Sbjct: 1   MTHVVTDSCVLCRYTDCVDVCPVDCFREGPNFLSIDPDECIDCAVCVAECPVNAIYAEED 60

Query: 61  LPAALAHFEDLNAKLAKLPGWQPITQVKPPMAGHEQWKDVPDKLALLQM 109
           +PA   H+  LN +L++   W  IT+ K P+   E+WKD  DKL  L+ 
Sbjct: 61  VPADQQHYIKLNVELSR--NWPSITKTKAPLPEAEEWKDKTDKLQFLKR 107


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.324    0.141    0.489 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 222,795
Number of extensions: 7819
Number of successful extensions: 57
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 60
Number of HSP's successfully gapped: 3
Length of query: 112
Length of database: 1,000,347
Length adjustment: 70
Effective length of query: 42
Effective length of database: 769,697
Effective search space: 32327274
Effective search space used: 32327274
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 122 (51.6 bits)