BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1770.p
         (780 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094252|ref|YP_001099327.1| putative DNA translocase ftsK 2...  1177   0.0  

>gi|134094252|ref|YP_001099327.1| putative DNA translocase ftsK 2
           [Herminiimonas arsenicoxydans]
          Length = 777

 Score = 1177 bits (3045), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 616/776 (79%), Positives = 666/776 (85%), Gaps = 5/776 (0%)

Query: 1   MSKTSQAHIR-TTKTPAPPMPNRLVRLLSEARWLALLALLAYLALILLSYSKTDPGWSVA 59
           M+K S A+ R T  T   P+P RLVRLLSEARW  L A+  YL LI L+YS  DPGWS A
Sbjct: 1   MTKPSPAYTRKTNSTKDQPLPGRLVRLLSEARWFVLAAVTLYLILIFLTYSPIDPGWSHA 60

Query: 60  SAVPRVGNWGGRVGAWTADLMLYIFGLSAWWWCVLVGRSVWTGYRRLSNRFLVAQPVEPE 119
           S VP++ N GGR GAW ADL+L+IFG SAWW CV   R VW GYRRLS RFL+ +  EPE
Sbjct: 61  SVVPKLHNLGGRAGAWLADLLLFIFGFSAWWLCVFFLRLVWIGYRRLSQRFLLKKEPEPE 120

Query: 120 HQQEPLIRAVGFVFMLTGSMGIEFTRMHRFAPKLPHSSGGVLGEMIGTAMQPTFGFTGST 179
           H QE L+R +GF  ++ GS+G+E+ RM+    +LP + GGVLGE++G A Q  FGF G+T
Sbjct: 121 HHQEGLVRGIGFFLLMIGSVGLEYLRMYTLKAQLPRTPGGVLGELLGNAAQNAFGFMGAT 180

Query: 180 LLLLLLFGLGFSLLFQVSWLAAVERIGGLIEDGLFAVRDFFAARADRRAGQEAAVKREET 239
           LLLLLLFGLGFSL F VSWL   ERIG  IE  L AVR+   AR DR+ G  AAVKREE 
Sbjct: 181 LLLLLLFGLGFSLFFHVSWLGVAERIGETIELVLQAVRNLHGAREDRKLGHVAAVKREEV 240

Query: 240 VVQERAKIVEAPPIRIEPQIVEVQKSDRVQKEKQTSLFDDL-NSELPPLSLLDEAPPAQQ 298
           VV ERAKIV+APPIRIEPQIV V KSDRV+KE+Q SLF+DL ++ LPPLSLLDEAP AQ+
Sbjct: 241 VVNERAKIVDAPPIRIEPQIVAVPKSDRVEKERQVSLFNDLPDTNLPPLSLLDEAPQAQE 300

Query: 299 TVSVETLEFTSRLIEKKLADFGVEVKVVAAYPGPVITRYEIEPATGVKGSQIVNLARDLA 358
           TVS+ETLEFTSRLIEKKL+DFGV  KVVAAYPGPV+TRYEI+PATGVKGSQIV LARDLA
Sbjct: 301 TVSIETLEFTSRLIEKKLSDFGVMAKVVAAYPGPVVTRYEIDPATGVKGSQIVGLARDLA 360

Query: 359 RSLSLTSIRVVEVIQGKNYMGLELPNPKRQIVRLTEILGSKVYNDSHSSLTVALGKDIAG 418
           RSLSLTSIRVVE I GKNYM LELPNPKRQIVRLTEI+ SKVYNDS SSLTVALGKDIAG
Sbjct: 361 RSLSLTSIRVVETIPGKNYMALELPNPKRQIVRLTEIISSKVYNDSVSSLTVALGKDIAG 420

Query: 419 NPVVADLAKMPHLLVAGTTGSGKSVGINATILSLLYKSSPRQVRLILIDPKMLELSIYEG 478
           NPVVADLAKMPHLLVAGTTGSGKSVGINATILSLLYKS P QVRLILIDPKMLELSIYEG
Sbjct: 421 NPVVADLAKMPHLLVAGTTGSGKSVGINATILSLLYKSDPNQVRLILIDPKMLELSIYEG 480

Query: 479 IPHLLAPVVTDMRQAGHALNWAVEEMERRYKKMSKLGVRNLAGYNQKIADADKRGEKIPN 538
           IPHLLAPVVTDMRQAGHALNW V EMERRYK MSKLGVRNLAGYN KIA+A+K  +KIPN
Sbjct: 481 IPHLLAPVVTDMRQAGHALNWGVNEMERRYKLMSKLGVRNLAGYNTKIAEAEKNEQKIPN 540

Query: 539 PFSLTPDAPEPLEQLETIVIIIDELADLMMVVGKKVEELIARIAQKARAAGIHLILATQR 598
           PFSLTPDAPEPLE+L TIVIIIDELADLMMVVGKKVEELIARIAQKARAAGIHLILATQR
Sbjct: 541 PFSLTPDAPEPLEKLPTIVIIIDELADLMMVVGKKVEELIARIAQKARAAGIHLILATQR 600

Query: 599 PSVDVITGLIKANVPTRIAFQVSSKIDSRTILDQMGAETLLGMGDMLYNPPGTGLPVRVH 658
           PSVDVITGLIKAN+PTRIAFQVSSKIDSRTILDQMGAE LLGMGDMLY PPGTGLPVRVH
Sbjct: 601 PSVDVITGLIKANIPTRIAFQVSSKIDSRTILDQMGAEALLGMGDMLYMPPGTGLPVRVH 660

Query: 659 GAFVSDDEVHRVVEHLKSQGEPNYIEGILEGGVLEDAEGGGGSGAAAGAGGGEGDEMYDQ 718
           GAFVSD+EVHRVV+HLKSQGEPNYIEGILEGGV+ED   G  +  A G  GGE D +YDQ
Sbjct: 661 GAFVSDEEVHRVVDHLKSQGEPNYIEGILEGGVVED---GDLTLGAEGGAGGEADALYDQ 717

Query: 719 AVAVVLKHRRASISLVQRHLRIGYNRAARLLEQMEQSGLVSTMQSNGNREILVPAG 774
           AVA+VLK+RRASISLVQRHLRIGYNRAARLLEQMEQSGLVSTMQSNGNREILVPAG
Sbjct: 718 AVAIVLKNRRASISLVQRHLRIGYNRAARLLEQMEQSGLVSTMQSNGNREILVPAG 773


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.318    0.135    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 1,301,769
Number of extensions: 50485
Number of successful extensions: 223
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 221
Number of HSP's successfully gapped: 1
Length of query: 780
Length of database: 1,000,347
Length adjustment: 89
Effective length of query: 691
Effective length of database: 707,092
Effective search space: 488600572
Effective search space used: 488600572
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 132 (55.5 bits)