BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1769.p
         (317 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094251|ref|YP_001099326.1| thioredoxin reductase, FAD/NAD(...   563   e-162
gi|134093318|ref|YP_001098393.1| alkyl hydroperoxide reductase s...   130   7e-32

>gi|134094251|ref|YP_001099326.1| thioredoxin reductase,
           FAD/NAD(P)-binding [Herminiimonas arsenicoxydans]
          Length = 317

 Score =  563 bits (1451), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 267/317 (84%), Positives = 293/317 (92%)

Query: 1   MSTPKHAKVLILGSGPAGYSAAVYAARANLNPVLITGVEQGGQLMTTTDVENWPGDPLGV 60
           M +PKHA VLILGSGPAGYSAAVYAARANL PVLITGVEQGGQLMTTTDVENWPGDPLGV
Sbjct: 1   MPSPKHAHVLILGSGPAGYSAAVYAARANLKPVLITGVEQGGQLMTTTDVENWPGDPLGV 60

Query: 61  QGPELMQRLQQHAERFNTEIIFDHIHTTKLSERPFRLIGDNGEYTADALIIATGASAQYL 120
           QGPELMQRL QHAERFNTEIIFDHIHTTKL E+P RLIGD GEYT D+LIIATGASAQYL
Sbjct: 61  QGPELMQRLLQHAERFNTEIIFDHIHTTKLDEKPIRLIGDMGEYTCDSLIIATGASAQYL 120

Query: 121 GLPSEQAFMGRGVSACATCDGFFYRGKEVAVIGGGNTAVEEALYLSNIASKVTIVHRRDK 180
           GLPSEQA+MG+GVSACATCDGFFYR +EVAVIGGGNTAVEEALYLSNIA+KVT+VHRRDK
Sbjct: 121 GLPSEQAYMGKGVSACATCDGFFYREQEVAVIGGGNTAVEEALYLSNIATKVTLVHRRDK 180

Query: 181 FRAEPILIDRLLHKVSEGKIAIQWHSTLDEVVGDDSGVTGIKIKSTQDGAITDIPVHGLF 240
           FRAE ILIDRL+ KV+EGKI I+++ TLDE+ GDDSGVTGI I+ST D +IT I +HG+F
Sbjct: 181 FRAEAILIDRLMAKVAEGKIEIKYNHTLDEITGDDSGVTGINIRSTTDDSITAIKLHGVF 240

Query: 241 VAIGHKPNTSIFEGQLEMHNGYLKTRTGTEGFATATSIDGVFAAGDVQDHVYRQAITSAG 300
           +AIGHKPNTSIFEGQL+MHNGY+KT+TG EG AT+TS+ GVFAAGDVQDH+YRQA+TSAG
Sbjct: 241 IAIGHKPNTSIFEGQLDMHNGYIKTKTGLEGMATSTSVPGVFAAGDVQDHIYRQAVTSAG 300

Query: 301 TGCMAALDAQRYLEGLE 317
           TGCMAALDAQRYLE  E
Sbjct: 301 TGCMAALDAQRYLESQE 317


>gi|134093318|ref|YP_001098393.1| alkyl hydroperoxide reductase
           subunit F [Herminiimonas arsenicoxydans]
          Length = 531

 Score =  130 bits (328), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 91/282 (32%), Positives = 146/282 (51%), Gaps = 25/282 (8%)

Query: 41  GGQLMTTTDVENWPGDPLGVQ---GPELMQRLQQHAERFNTEIIFDHIHTTKLSER-PFR 96
           GGQ++ T  +EN+    + VQ   GP+    L+QH   ++ +I+    +  + SE  P +
Sbjct: 246 GGQVLDTLSIENF----VSVQETDGPKFAVALEQHVRSYDVDIM----NVQQASELVPGK 297

Query: 97  LI----GDNGEYTADALIIATGASAQYLGLPSEQAFMGRGVSACATCDGFFYRGKEVAVI 152
           LI     D G      +I+ATGA  + + +P E  +  +GV+ C  CDG  ++GK VAVI
Sbjct: 298 LIEIKLKDGGSLKGKTVILATGARWRTIDVPGENEYRNKGVAYCPHCDGPLFKGKRVAVI 357

Query: 153 GGGNTAVEEALYLSNIASKVTIVHRRDKFRAEPILIDRLLHKVSEGKIAIQWHSTLDEVV 212
           GGGN+ VE A+ L+ I   VT++    + RA+ +L  R L  +    +     +T  E+ 
Sbjct: 358 GGGNSGVEAAIDLAGIVGHVTLIEFGAELRADAVL-QRKLRSMPNVTVITSAQTT--EIT 414

Query: 213 GDDSGVTGIKIKSTQDGAITDIPVHGLFVAIGHKPNTSIFEGQLEM-HNGYLKTRTGTEG 271
           GD   V G+  K  +   +  + + G+F+ IG  PNT   +G + +  +G ++     + 
Sbjct: 415 GDGKRVNGLVYKDRKTEEVKTVELEGVFIQIGLVPNTEWLKGTVALSRHGEIEVDARGQ- 473

Query: 272 FATATSIDGVFAAGDVQDHVYRQAITSAGTGCMAALDAQRYL 313
               TS+ GVFAAGDV    Y+Q + + G G  AAL A  +L
Sbjct: 474 ----TSVPGVFAAGDVTTVPYKQIVIAVGEGSKAALSAFDHL 511


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.318    0.135    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 596,945
Number of extensions: 24938
Number of successful extensions: 87
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 85
Number of HSP's successfully gapped: 2
Length of query: 317
Length of database: 1,000,347
Length adjustment: 82
Effective length of query: 235
Effective length of database: 730,157
Effective search space: 171586895
Effective search space used: 171586895
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 129 (54.3 bits)