BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1767.p
         (220 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094250|ref|YP_001099325.1| hypothetical protein HEAR1016 [...   278   2e-76

>gi|134094250|ref|YP_001099325.1| hypothetical protein HEAR1016
           [Herminiimonas arsenicoxydans]
          Length = 213

 Score =  278 bits (711), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 148/213 (69%), Positives = 178/213 (83%), Gaps = 2/213 (0%)

Query: 5   ATMKDFSALQGLRRDLQEQEKARALALAERQRQEAAERAEANLFRNSIGTVAPLRPKAAD 64
           A++KDF+ L+ L++DL+ +E+AR  A A+R + E   + EA+LFR SIG VAPL P   D
Sbjct: 3   ASLKDFAGLKSLQKDLKTREEARQAAEAQRMQAEKTAQLEADLFRRSIGEVAPLTP--PD 60

Query: 65  KALHPPQLPPPIARQHLADEQAALLESLSDEFTVDTLMDSDENLSFARPGVGVDVLSKLR 124
           K    P  P PIARQHLADEQAAL ESLSDEFT+DTL+D+DE LS+AR G+G DV+ KLR
Sbjct: 61  KITVMPPRPLPIARQHLADEQAALRESLSDEFTIDTLLDTDEALSYARKGIGSDVVRKLR 120

Query: 125 RGNWVIQAQLDLHGYRRDQAREALGEFLRQSRRRGLRCVRVIHGKGLGSVNKEPVLKHKV 184
           RG+W+IQ+QLDLHG R D+AREAL E+LR + +RGLRCVRVIHGKGLGS+NKEPVLKHKV
Sbjct: 121 RGHWLIQSQLDLHGMRTDEAREALSEYLRTAIKRGLRCVRVIHGKGLGSINKEPVLKHKV 180

Query: 185 RNWLAQKDEVMAFCQARAADGGAGALVVLLRSS 217
           RNWLAQKDEV+AFCQA+AADGGAGALVVLLR+S
Sbjct: 181 RNWLAQKDEVIAFCQAKAADGGAGALVVLLRAS 213


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.319    0.133    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 322,114
Number of extensions: 11316
Number of successful extensions: 31
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 30
Number of HSP's successfully gapped: 1
Length of query: 220
Length of database: 1,000,347
Length adjustment: 78
Effective length of query: 142
Effective length of database: 743,337
Effective search space: 105553854
Effective search space used: 105553854
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 127 (53.5 bits)