BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1764.p (680 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134093917|ref|YP_001098992.1| putative sigma-54 dependent tra... 206 3e-54 gi|134096418|ref|YP_001101493.1| propionate catabolism transcrip... 201 7e-53 gi|134093746|ref|YP_001098821.1| AoxR regulatory protein [Hermin... 191 1e-49 gi|134096598|ref|YP_001101673.1| two-component regulatory system... 184 1e-47 gi|134095935|ref|YP_001101010.1| type 4 fimbriae expression regu... 174 1e-44 >gi|134093917|ref|YP_001098992.1| putative sigma-54 dependent transcriptional regulator [Herminiimonas arsenicoxydans] Length = 550 Score = 206 bits (524), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 134/328 (40%), Positives = 188/328 (57%), Gaps = 24/328 (7%) Query: 353 PDLQALDTGDARMSAIIGKLRKVIDRDIAVLITGETGTGKEWLAQAIHRESARFRATQTR 412 P + L T M I +KV VLITGE+G GKE L + IH+ES T + Sbjct: 243 PAIAGLITRSPIMQQITVLAQKVAKVGATVLITGESGVGKEVLTRLIHKES-----THDK 297 Query: 413 GGAAPFVAVNCSAIPENLIEAELFGYEDGAFTGARRKGAIGKIAQAQGGTLFLDEIGDMP 472 G PFV +NC AIP +L+E+ELFGYE GAFTGA+R+G +G I A GTLFLDEIG++P Sbjct: 298 G---PFVKINCGAIPRDLLESELFGYEGGAFTGAQRQGKVGMIEVADKGTLFLDEIGELP 354 Query: 473 LALQGRLLRVLQERTVTPLGSQRVIPVEFALVCATNQPLREMAARHSFREDLYYRINGLQ 532 L LQ +LL+VLQ+RT+T LGS R I V+ +V ATN+ L+ M FR DL+YR+N + Sbjct: 355 LDLQVKLLQVLQDRTLTRLGSTRPIQVDVRVVAATNRDLQAMVDARQFRSDLFYRLNVVP 414 Query: 533 VKLPALRE-RSDLAQLIERIL--IAEGGALAPRFDEQAQALLQASRWPGNLRQLSNLIRT 589 + +P LRE R D+ LI+ L + R EQ+ A L WPGN+R+L N++ Sbjct: 415 LHVPPLRERREDILPLIQHFLDELNAQYGFDKRLSEQSLAALLDYDWPGNIRELRNMVER 474 Query: 590 ALAMAEGEAWIGVQHLPDDFLEEAGPLQAGCGMAATTVCEEMRSDCLSIHDNEWATIERA 649 L + E+ I LP P++ +A + ++RS E ++ A Sbjct: 475 -LVVTAPESLIRSDSLPTPL----RPVELQSDLAHLDI--KVRSAHF-----ERKIVQEA 522 Query: 650 LRTHAGNVSAAAKALGVSRNTLYRRFKS 677 + + G+ AAAK L +S++T+ RR K+ Sbjct: 523 VERY-GSTRAAAKHLQISQSTVVRRLKT 549 >gi|134096418|ref|YP_001101493.1| propionate catabolism transcriptional activator [Herminiimonas arsenicoxydans] Length = 550 Score = 201 bits (512), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 133/307 (43%), Positives = 175/307 (57%), Gaps = 18/307 (5%) Query: 382 VLITGETGTGKEWLAQAIHRESARFRATQTRGGAAPFVAVNCSAIPENLIEAELFGYEDG 441 VLI GETGTGKE +AQAIHR + +T+ G PFVAVNC A+ E+L+E+ELFGYE+G Sbjct: 248 VLIQGETGTGKELVAQAIHRAHPLIQG-KTQAGH-PFVAVNCGALAESLLESELFGYEEG 305 Query: 442 AFTGARRKGAIGKIAQAQGGTLFLDEIGDMPLALQGRLLRVLQERTVTPLGSQRVIPVEF 501 AFTG+RR G G A GTLFLDEIG+MPL+LQ RLLRVL+ER V +G R IPV Sbjct: 306 AFTGSRRGGRAGLFEAAHRGTLFLDEIGEMPLSLQTRLLRVLEEREVVRVGGTRPIPVSV 365 Query: 502 ALVCATNQPLREMAARHSFREDLYYRINGLQVKLPALRER-SDLAQLIERILIAEGGALA 560 ++ AT+ L FR DL+YR++ L++ LP LR+R D+ L E L + +L Sbjct: 366 RIISATHCDLDARVREGRFRADLFYRLSVLRLSLPPLRQRPEDVPALTEWYLKSALASLD 425 Query: 561 PRFDEQAQA-------LLQASRWPGNLRQLSNLIRTALAMAEGEAWIGVQHLPDDFLEEA 613 R A LL + WPGN+R+L NL+ +Q L FL+ Sbjct: 426 VRPHANLHAEISTCMPLLASYAWPGNVRELRNLMERLALFLAAAP---LQALTPAFLKNI 482 Query: 614 GPLQAGCGMAATTVCEEMRSDCLSIHDNEWATIERALRTHAGNVSAAAKALGVSRNTLYR 673 P + A V + D L+ E T+++ L+ H GN AAA LG+SR TL+R Sbjct: 483 APELSASVSDAIAVASQ---DVLAQEQTE--TLQQVLQRHHGNREAAANYLGISRTTLWR 537 Query: 674 RFKSRGH 680 R + H Sbjct: 538 RLQLAAH 544 >gi|134093746|ref|YP_001098821.1| AoxR regulatory protein [Herminiimonas arsenicoxydans] Length = 454 Score = 191 bits (484), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 122/314 (38%), Positives = 176/314 (56%), Gaps = 22/314 (7%) Query: 374 KVIDRDIAVLITGETGTGKEWLAQAIHRESARFRATQTRGGAAPFVAVNCSAIPENLIEA 433 K+ ++ +VL+TGE+G+GKE LA+ +HR + + G PF+AVNC A+PE ++EA Sbjct: 147 KMGEQWTSVLVTGESGSGKEELARLLHRSA--------QAGNNPFIAVNCGALPEGMMEA 198 Query: 434 ELFGYEDGAFTGARRKGAIGKIAQAQGGTLFLDEIGDMPLALQGRLLRVLQERTVTPLGS 493 ELFGYE GAFTGA K G QA GT+FLDEIG++ A Q RLLRVLQE T+T LGS Sbjct: 199 ELFGYERGAFTGAA-KSHRGYFEQANNGTVFLDEIGELAPAAQVRLLRVLQEHTLTRLGS 257 Query: 494 QRVIPVEFALVCATNQPLREMAARHSFREDLYYRINGLQVKLPALRERSDLAQLIERILI 553 ++ I V F L+ AT++ +RE FREDLYYRIN +Q+++P LRER D + R+ + Sbjct: 258 EKPIKVNFRLIAATHRDVREEVKAGRFREDLYYRINIIQLRVPPLRERLDDVAWLARLFL 317 Query: 554 AEGG---ALAPR-FDEQAQALLQASRWPGNLRQLSNLIRTALAMAEGEAWIGVQHLPDDF 609 + +PR E L W GN+R+L + I A + PDDF Sbjct: 318 EQWNQAHPTSPRMLSEPTITFLCTLPWRGNIRELKHAIERACLLTAHPLL-----RPDDF 372 Query: 610 LEEAGPLQAGCGMAATTVCEEMRSDCLSI----HDNEWATIERALRTHAGNVSAAAKALG 665 + + G AT V + + + + E + + L ++G ++ A ALG Sbjct: 373 EMQISEEKLGTFHPATEVPAMAQPHIIPLAEFNREQERRYLVQVLAHYSGQMAQTAAALG 432 Query: 666 VSRNTLYRRFKSRG 679 +SR TL+ + + G Sbjct: 433 ISRKTLWEKTRKLG 446 >gi|134096598|ref|YP_001101673.1| two-component regulatory system response regulator [Herminiimonas arsenicoxydans] Length = 474 Score = 184 bits (467), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 117/302 (38%), Positives = 171/302 (56%), Gaps = 35/302 (11%) Query: 382 VLITGETGTGKEWLAQAIHRESARFRATQTRGGAAPFVAVNCSAIPENLIEAELFGYEDG 441 VLITGE+GTGKE A+A+H S+R FV VNC A+ ++IE+ELFG+ G Sbjct: 203 VLITGESGTGKEIAARAMHYLSSR--------SGNHFVPVNCGAVAPDIIESELFGHVKG 254 Query: 442 AFTGARRKGAIGKIAQAQGGTLFLDEIGDMPLALQGRLLRVLQERTVTPLGSQRVIPVEF 501 AF+GA G AQGGTLFLDE+ ++P+A+Q +LLRVL+E+ + P+G++R IPV+ Sbjct: 255 AFSGAASSRE-GLFFYAQGGTLFLDEVAELPMAMQVKLLRVLEEKKIRPVGAEREIPVDV 313 Query: 502 ALVCATNQPLREMAARHSFREDLYYRINGLQVKLPALRERSD----LAQLIERILIAEGG 557 ++ ATN+ + E FR+DLYYR+N +QV +P LRER+D LA R L + G Sbjct: 314 RVIAATNRNVEEAVQEGRFRQDLYYRLNVVQVHMPPLRERADDIPALAAYFVRQLAPQLG 373 Query: 558 ALAPRFDEQAQALLQASRWPGNLRQLSNLIRTALAMAEGEAWIGVQHLPDDFLEEAGPLQ 617 + D A + + WPGN+R+L NLI E W+ + ++P+ Sbjct: 374 VPPQQPDNALLAAMVSHAWPGNVRELRNLI---------ERWLILGNIPE---------- 414 Query: 618 AGCGMAATTVCEEMRSDCLSIHDNEWATIERALRTHAGNVSAAAKALGVSRNTLYRRFKS 677 + + +V + SD +S+ E I + L GN + AA+ LG+SR TL R+ Sbjct: 415 --IAIGSKSVAIDNGSD-VSLQAIEKQHILKILGAADGNKTEAARRLGLSRKTLERKCAE 471 Query: 678 RG 679 G Sbjct: 472 WG 473 >gi|134095935|ref|YP_001101010.1| type 4 fimbriae expression regulatory protein [Herminiimonas arsenicoxydans] Length = 475 Score = 174 bits (442), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 120/312 (38%), Positives = 167/312 (53%), Gaps = 27/312 (8%) Query: 382 VLITGETGTGKEWLAQAIHRESARFRATQTRGGAAPFVAVNCSAIPENLIEAELFGYEDG 441 V I+GE+G+GKE A+ IH +SAR PFVAVNC AIPE L+EAE FGY G Sbjct: 166 VAISGESGSGKELAARDIHAQSAR--------NDKPFVAVNCGAIPEALMEAEFFGYRKG 217 Query: 442 AFTGARRKGAIGKIAQAQGGTLFLDEIGDMPLALQGRLLRVLQERTVTPLGSQRVIPVEF 501 AFTGA G A GGTL LDE+ D+PLA+Q +LLR +QER V +G+ PV+ Sbjct: 218 AFTGAADDRD-GFFQAANGGTLLLDEVADLPLAMQVKLLRAIQERCVRKVGATVEEPVDV 276 Query: 502 ALVCATNQPLREMAARHSFREDLYYRINGLQVKLPALRER-SDLAQLIERILIAEGGALA 560 ++ AT+Q L + + +FR+DLYYR+N +++ LP LRER D+ L + IL+ GG Sbjct: 277 RIISATHQNLHDCVGKGTFRQDLYYRLNVIELHLPPLRERLDDIGLLAQAILVRLGGGEQ 336 Query: 561 PRFDEQAQALLQASRWPGNLRQLSNLIRTALAMAEGEAWIGVQHLPDDFLEEAGPLQAGC 620 A A L + +PGN+R+L N++ ALA A + I V L P A Sbjct: 337 AALSPAALAALCSYSFPGNVRELENILERALAFA-NDGLIEVADLALKASPSLNPAPAST 395 Query: 621 GMAATT-VCEEMRSDCLS---------------IHDNEWATIERALRTHAGNVSAAAKAL 664 A + + E+ ++ L+ + + E I RAL N + AA+ L Sbjct: 396 PSAVSQPISSEVEAEALATLVASSDIPESLPDHLDEVEREIIRRALAKTRFNRTQAAELL 455 Query: 665 GVSRNTLYRRFK 676 G+S L R + Sbjct: 456 GISFRQLRYRMQ 467 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.321 0.134 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 1,207,982 Number of extensions: 47986 Number of successful extensions: 209 Number of sequences better than 1.0e-08: 8 Number of HSP's gapped: 185 Number of HSP's successfully gapped: 8 Length of query: 680 Length of database: 1,000,347 Length adjustment: 88 Effective length of query: 592 Effective length of database: 710,387 Effective search space: 420549104 Effective search space used: 420549104 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 132 (55.5 bits)