BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1761.p
         (112 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094249|ref|YP_001099324.1| regulatory protein (P-II) for n...   182   3e-48
gi|134093432|ref|YP_001098507.1| nitrogen regulatory protein P-I...   174   8e-46
gi|134094812|ref|YP_001099887.1| regulatory protein PII [Hermini...    70   2e-14
gi|134093786|ref|YP_001098861.1| putative regulatory protein (P-...    69   5e-14

>gi|134094249|ref|YP_001099324.1| regulatory protein (P-II) for
           nitrogen assimilation by glutamine synthetase (ATase)
           [Herminiimonas arsenicoxydans]
          Length = 112

 Score =  182 bits (462), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 102/112 (91%), Positives = 107/112 (95%)

Query: 1   MKQVTAIIKPFKLDEVRESLAEVGVTGLTVTEVKGFGRQKGHTELYRGAEYVVDFLPKVK 60
           MKQ+TAIIKPFKLDEVRE LA+VGVTGLTVTEVKGFGRQKGHTELYRGAEYVVDFLPKVK
Sbjct: 1   MKQITAIIKPFKLDEVREGLADVGVTGLTVTEVKGFGRQKGHTELYRGAEYVVDFLPKVK 60

Query: 61  IEVVIDDKVVEQAVDAIIKAARTGKIGDGKIFVQEVEQVIRIRTGETGPDAV 112
           +E V+DD VVEQAVDAIIKAARTGKIGDGKIFVQ VEQV+RIRTGETG DAV
Sbjct: 61  VEAVVDDAVVEQAVDAIIKAARTGKIGDGKIFVQAVEQVVRIRTGETGIDAV 112


>gi|134093432|ref|YP_001098507.1| nitrogen regulatory protein P-II 2
           [Herminiimonas arsenicoxydans]
          Length = 112

 Score =  174 bits (442), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 84/112 (75%), Positives = 101/112 (90%)

Query: 1   MKQVTAIIKPFKLDEVRESLAEVGVTGLTVTEVKGFGRQKGHTELYRGAEYVVDFLPKVK 60
           MK +TAIIKPFKLDEVRE+L+ +GV G+TVTEVKGFGRQKGHTELYRGAEYVVDFLPK K
Sbjct: 1   MKLITAIIKPFKLDEVREALSAIGVQGITVTEVKGFGRQKGHTELYRGAEYVVDFLPKTK 60

Query: 61  IEVVIDDKVVEQAVDAIIKAARTGKIGDGKIFVQEVEQVIRIRTGETGPDAV 112
           IE  +DD +V++A++AI  AARTGKIGDGKIFV +++QV+RIRTGETG +A+
Sbjct: 61  IEAAVDDAIVDRAIEAIETAARTGKIGDGKIFVYDLQQVVRIRTGETGKEAL 112


>gi|134094812|ref|YP_001099887.1| regulatory protein PII
           [Herminiimonas arsenicoxydans]
          Length = 113

 Score = 70.1 bits (170), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 38/113 (33%), Positives = 62/113 (54%), Gaps = 1/113 (0%)

Query: 1   MKQVTAIIKPFKLDEVRESLAEVG-VTGLTVTEVKGFGRQKGHTELYRGAEYVVDFLPKV 59
           MKQ+ AII+P +L+ V ++L  +  + G T+   +G  R  G   ++   E+  D    +
Sbjct: 1   MKQIIAIIQPHRLEMVEKALHGMNHLPGFTLFPARGHARGHGAHHIFTADEWSPDTHEHI 60

Query: 60  KIEVVIDDKVVEQAVDAIIKAARTGKIGDGKIFVQEVEQVIRIRTGETGPDAV 112
            + +   D + + AV+AI  A+ TG  GDG I V  VE ++RI +GE G  A+
Sbjct: 61  VLLMFCPDDIAQDAVEAIRAASHTGNRGDGMIAVTAVEDIVRIHSGERGDAAI 113


>gi|134093786|ref|YP_001098861.1| putative regulatory protein (P-II)
           for nitrogen assimilation by glutamine synthetase
           (ATase) [Herminiimonas arsenicoxydans]
          Length = 113

 Score = 69.3 bits (168), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 38/113 (33%), Positives = 62/113 (54%), Gaps = 1/113 (0%)

Query: 1   MKQVTAIIKPFKLDEVRESLAEVG-VTGLTVTEVKGFGRQKGHTELYRGAEYVVDFLPKV 59
           MKQ+ AII+P +L+ V  +L  +  + G T+   +G  R  G   ++   E+  D    +
Sbjct: 1   MKQIIAIIQPHRLEIVERALQGMSHLPGFTLFPARGHARGHGAQHIFTADEWNPDMHEHI 60

Query: 60  KIEVVIDDKVVEQAVDAIIKAARTGKIGDGKIFVQEVEQVIRIRTGETGPDAV 112
            + +   D + ++AV+AI  A+ TG  GDG I V  VE ++RI +GE G  A+
Sbjct: 61  VLLMFCPDDIADEAVEAIRAASHTGNSGDGLIAVTAVEDMVRIHSGERGDAAL 113


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.318    0.138    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 152,542
Number of extensions: 3856
Number of successful extensions: 25
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 23
Number of HSP's successfully gapped: 4
Length of query: 112
Length of database: 1,000,347
Length adjustment: 70
Effective length of query: 42
Effective length of database: 769,697
Effective search space: 32327274
Effective search space used: 32327274
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 122 (51.6 bits)