BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1760.p
         (685 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094248|ref|YP_001099323.1| NAD synthetase [Herminiimonas a...    97   3e-21

>gi|134094248|ref|YP_001099323.1| NAD synthetase [Herminiimonas
           arsenicoxydans]
          Length = 537

 Score = 96.7 bits (239), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 84/260 (32%), Positives = 122/260 (46%), Gaps = 31/260 (11%)

Query: 346 EVYNIQVQALVQRLSSSGLKKVVIGVSGGLDSTHALLVCAKAMDKLGLPRTNILAYTMPG 405
           +VY   V  +   +  +G    +IG+SGG+DS    L  A A+D LG  +   +   MP 
Sbjct: 262 QVYKALVLGVRDYIGKNGFPGALIGMSGGVDSA---LTLAVAVDALGADKVRTI--MMPS 316

Query: 406 FATSSRTLVQAHQLMAQVGCAAQEIDIRPSCEQMLRDLGHPYSRGEPVYDITFENVQAGE 465
             T+  +L+ +  ++ +VG    EI I    E   R L + + +G P  D T EN+QA  
Sbjct: 317 PYTAEISLLDSRDMVQRVGVRYDEIGINDCFEAFNRTLANEF-KGLP-EDATEENIQARI 374

Query: 466 RTNHLFRLANHHGAIVIGTGDLSELALGWCTYGVGDHMSHYNVNASVPKTLITHLVRWVA 525
           R   L  L+N HGAIV+ TG+ SE+A+G+CT   GD    + V   + KTL+    R  A
Sbjct: 375 RGTILMALSNKHGAIVLTTGNKSEMAVGYCTL-YGDMAGGFAVLKDIAKTLV---YRLCA 430

Query: 526 ESGSLELKQPEVLIHILETEISPELVPGASEGEPGQRTQDFIGPYELQD--FNLYY---- 579
              S+    PE    IL    S EL        PGQ  QD + PY++ D    +Y     
Sbjct: 431 YRNSVSDVIPE---RILTRAPSAEL-------RPGQTDQDSLPPYDILDAIMQMYMEENQ 480

Query: 580 ----ILRYGFTPAKVAFLAH 595
               I+  G+    VA + H
Sbjct: 481 SGADIIAAGYRAEDVARITH 500



 Score = 73.6 bits (179), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 58/172 (33%), Positives = 80/172 (46%), Gaps = 21/172 (12%)

Query: 15  RVAVAVPECKVADPGFNAQRTIALAEQAAARGAALVSFPELGLSAYSCEDLFQQRALLDA 74
           +VA+A     V D   N  +    + +AA +GA +V  PEL L  Y  EDL  +++    
Sbjct: 4   KVAIAQINSTVGDLAGNRAKIAEFSRRAAEQGADIVLTPELSLVGYPPEDLLLRQSFYAK 63

Query: 75  SLQALQAVLEASLRIPAA-LIVGLPLKVDHQLYNCAVVLHCGRILGVVPKSYLPNYSEFY 133
           S QAL A+      +    ++VG P + D Q +N A VL  G+I     K  LPN + F 
Sbjct: 64  SAQALDALAADLAELKNLHVVVGHPFEKDGQRFNAASVLLNGKISATYCKHDLPNATVFD 123

Query: 134 EARQFSSADCAVTRRVRLLGQEVGFGSHLLFEIANIADFRFHIEICEDVWVP 185
           E R FSS D AV                 +F++  +   RF I ICED W P
Sbjct: 124 EKRYFSSCDQAV-----------------VFDVKGV---RFGINICEDTWFP 155


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.321    0.136    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 1,243,539
Number of extensions: 49432
Number of successful extensions: 138
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 133
Number of HSP's successfully gapped: 2
Length of query: 685
Length of database: 1,000,347
Length adjustment: 88
Effective length of query: 597
Effective length of database: 710,387
Effective search space: 424101039
Effective search space used: 424101039
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 132 (55.5 bits)