BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1759.p
         (399 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094247|ref|YP_001099322.1| hypothetical protein HEAR1013 [...   522   e-149

>gi|134094247|ref|YP_001099322.1| hypothetical protein HEAR1013
           [Herminiimonas arsenicoxydans]
          Length = 389

 Score =  522 bits (1345), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 257/379 (67%), Positives = 302/379 (79%), Gaps = 4/379 (1%)

Query: 21  DYRTRIVSSLTEIGQQRWDALVAAQAEGNPFLSYAFLHALHESGAASADTGWEPHYLTLW 80
           +YRTRIVSSL++IGQ  WDALV  Q + NPFLS+AFL ALHES  ASA +GW+P +LT+W
Sbjct: 10  NYRTRIVSSLSKIGQPAWDALVQLQPDANPFLSFAFLDALHESACASAKSGWQPQFLTIW 69

Query: 81  Q----AESLVAALPLYRKFHSYGEYVFDWAWAEAYQRHGVDYYPKLLSAIPFTPVRGARL 136
           +    A+ LVAALPLY K HSYGEYVFDWAWA+AY+R+G++YYPKLLSAIPFTPV G+RL
Sbjct: 70  RGEEPAQELVAALPLYVKSHSYGEYVFDWAWADAYERNGLEYYPKLLSAIPFTPVTGSRL 129

Query: 137 MAVDDTARGALVAALRALQERNEVSSTHILYPPPEQAQQLADAGFLLRSGVQFHWRNEGY 196
           +  D  A  AL+AAL A+Q+ N  SSTHILYPP  QA  L +AGF+LR+GVQFHW N  Y
Sbjct: 130 LTRDAEAMTALLAALLAVQQGNNFSSTHILYPPSAQADILRNAGFMLRTGVQFHWLNADY 189

Query: 197 GSFSEFVDTLDRKKRKNILAERRKVAEQGVHFVWLRGAEITEAHWRFFNRCYRHTYAAHY 256
            +F EF+ TL+RKKRKNI AERRKV + GV F  + G E ++A W FF RCY HTYAAH+
Sbjct: 190 RNFDEFLHTLERKKRKNIRAERRKVQQAGVTFRHVSGHEASDADWIFFKRCYDHTYAAHH 249

Query: 257 STPYLNLDFFGRIGDTMPQHLLLTVALRGEEPIASSLTVHDDDTLYGRYWGALEHVPCLH 316
           STPYLNLDFF RIG TMPQ++LL VA +   PIASSL +HD+ T+YGRYWGA++H+ CLH
Sbjct: 250 STPYLNLDFFQRIGRTMPQNILLIVAEQDGIPIASSLLIHDEHTVYGRYWGAVKHIDCLH 309

Query: 317 FETAYYQPLEFCIAEKITWFEGGAQGEHKMARGFLPQKTWSAHWLAHPGFYDAVEHFLAR 376
           FETAYYQPLEFCI   +  FEGGAQGEHKMARGFLPQKTWSAHWLAH  F  A+E FL R
Sbjct: 310 FETAYYQPLEFCIVNNMACFEGGAQGEHKMARGFLPQKTWSAHWLAHAAFAHAIEEFLQR 369

Query: 377 EGGGIDGYISELNERNPFR 395
           E GGID Y+ ELNERNPF+
Sbjct: 370 ESGGIDTYMDELNERNPFK 388


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.322    0.136    0.447 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 833,762
Number of extensions: 34480
Number of successful extensions: 77
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 76
Number of HSP's successfully gapped: 1
Length of query: 399
Length of database: 1,000,347
Length adjustment: 84
Effective length of query: 315
Effective length of database: 723,567
Effective search space: 227923605
Effective search space used: 227923605
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)