BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1758.p
         (344 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094387|ref|YP_001099462.1| putative iron binding protein c...   474   e-135

>gi|134094387|ref|YP_001099462.1| putative iron binding protein
           component of ABC iron transporter [Herminiimonas
           arsenicoxydans]
          Length = 344

 Score =  474 bits (1219), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 222/338 (65%), Positives = 267/338 (78%)

Query: 7   ALGAMLAAIAASSFAQEKVLNLYSARHYQTDEALYADFTKTTGIKINRVDGDDAGILARL 66
           +L AM+   A+++ AQ+K LNLYSARHYQTDE LYA+FTK TGIKINR++ DD  +  RL
Sbjct: 7   SLLAMITLAASAAQAQDKELNLYSARHYQTDEILYANFTKQTGIKINRIEADDNALFERL 66

Query: 67  KSEGASSPADVILLVDAARLWKAQSEGLFQPVKSKLLDERIPANLHSKEGSEGTQWFGFS 126
           K+EG +SPADVI++VDAAR+W+A+ EG FQPV+SK+L  RIPANLH K+  +G +WFGFS
Sbjct: 67  KNEGKNSPADVIVMVDAARIWRAEIEGFFQPVQSKILQARIPANLHGKDDGKGPEWFGFS 126

Query: 127 TRARVIVYNKASVKPEDVDTYEALGDPKNKGKLCTRSGSHPYNVSLFGALLEHDGAAKTE 186
           TRARVIVYNK  V P DV TYE+L +P NKGK+CTRSGSHPYN+SL G+++E DG   TE
Sbjct: 127 TRARVIVYNKDKVNPADVATYESLANPVNKGKVCTRSGSHPYNLSLIGSMIERDGEKATE 186

Query: 187 AILKGMVANQARQPVGGDTDQIKAVGSGECGVAISNSYYVARLLRSSKPEDVALMEKVGI 246
              KGMVAN AR P GGDTDQIK   SGECGVAI+NSYY  RLLRS+KPED+A M+ VG 
Sbjct: 187 QWAKGMVANFARPPRGGDTDQIKGAASGECGVAIANSYYYVRLLRSTKPEDIAAMKNVGF 246

Query: 247 VWPNQKTYGAHVNIAGGGVAKHAPHKAEAVQFLEYLASDSAQRYFAEGNNEWPAVKSVKT 306
           +WPN +T G H NIAGGGVAK+APH+  AV+FLEYLASD AQ YFAEGNNEWPAV  V+ 
Sbjct: 247 IWPNAQTSGTHFNIAGGGVAKNAPHREAAVKFLEYLASDEAQGYFAEGNNEWPAVAKVQV 306

Query: 307 DNPALVKMGPFKAEVINVGAVGANQQKVLQMLDRVGYK 344
            NPAL  +G FK E ++V A+G NQ    ++LDRVGYK
Sbjct: 307 KNPALAALGKFKMENVSVAAIGKNQIAAQRILDRVGYK 344


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.315    0.131    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 627,753
Number of extensions: 25576
Number of successful extensions: 52
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 52
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 1,000,347
Length adjustment: 82
Effective length of query: 262
Effective length of database: 730,157
Effective search space: 191301134
Effective search space used: 191301134
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 129 (54.3 bits)