BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1755.p
         (348 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095273|ref|YP_001100348.1| putative signal peptide peptida...   445   e-126

>gi|134095273|ref|YP_001100348.1| putative signal peptide peptidase
           [Herminiimonas arsenicoxydans]
          Length = 334

 Score =  445 bits (1145), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 220/348 (63%), Positives = 266/348 (76%), Gaps = 14/348 (4%)

Query: 1   MSNNESENQQAQPPQSSASPASAPPPSSIPASVREDKKSGWERDVLEKLALFAVKEQRAR 60
           MSN+   +Q  QPP   A+  + P            KK GWER+VLEKLA   +KEQRAR
Sbjct: 1   MSNDS--DQLNQPPSWQAATPAIP------------KKEGWEREVLEKLAFATIKEQRAR 46

Query: 61  RRWGIFFRIAILAVIVMGGWLAFTYNKIESEPLGPHTALVEIKGAIDSEGQGSAAVVIPA 120
           RRWGIFF+   L +I    W +F  +  + E +GPHTAL++I+G I+++G G A  VI A
Sbjct: 47  RRWGIFFKFTTLLLIAFALWTSFGPSVSDMENVGPHTALIKIEGTIEAKGAGDAETVISA 106

Query: 121 LDKAFAASDSVGVILKINSPGGSPVQAGMINDEITRLRKEYPKKPIYVVVEEMCASGGYY 180
           L KA+A   SVG+IL+INSPGGSPVQAG+INDEITRLRK+YPKKP+YVVV E+CASGGYY
Sbjct: 107 LTKAYADPGSVGLILQINSPGGSPVQAGIINDEITRLRKKYPKKPLYVVVNEICASGGYY 166

Query: 181 IAVAADKIFVNKASLIGSVGVLMDGFGFTGLMDKLGVERRLLTAGENKSFLDPFSPQSPK 240
           IA AAD+I+VNKAS++GS+GVLMDGFGFTG M+KLGVERRLLTAGENK FLDPFSPQ+ K
Sbjct: 167 IASAADRIYVNKASIVGSIGVLMDGFGFTGTMEKLGVERRLLTAGENKGFLDPFSPQTEK 226

Query: 241 QREYALSMLEEIHQQFIEVVRQGRGTRLKETPDTFSGLVWTGSKAVELGLADGFGTVDSV 300
           Q+EYA  ML EIHQQFI+VVR GRG RLKETP+ FSGL W+G+K+VELGLADGFGTV+SV
Sbjct: 227 QKEYAQGMLNEIHQQFIDVVRTGRGKRLKETPEIFSGLFWSGAKSVELGLADGFGTVESV 286

Query: 301 ARDVIKAEDVVDYTQTENLSERVLKKFGVAFGAGFAKTMMSAPLSQLR 348
           ARD  KA ++VDYTQ E LS+RVL+KFG A G    K+  +     L+
Sbjct: 287 ARDEFKATNIVDYTQREGLSDRVLRKFGAAAGESAVKSFAAQTAPSLK 334


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.316    0.133    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 629,765
Number of extensions: 27398
Number of successful extensions: 70
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 70
Number of HSP's successfully gapped: 1
Length of query: 348
Length of database: 1,000,347
Length adjustment: 83
Effective length of query: 265
Effective length of database: 726,862
Effective search space: 192618430
Effective search space used: 192618430
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 129 (54.3 bits)