BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1751.p
         (1075 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093809|ref|YP_001098884.1| RNase G [Herminiimonas arsenico...   255   8e-69
gi|134095278|ref|YP_001100353.1| RNase E [Herminiimonas arsenico...   106   6e-24

>gi|134093809|ref|YP_001098884.1| RNase G [Herminiimonas
           arsenicoxydans]
          Length = 487

 Score =  255 bits (652), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 157/453 (34%), Positives = 248/453 (54%), Gaps = 6/453 (1%)

Query: 4   MLFNATQQEELRVAIVDGQKLIDIDIETTGREQRKSNIYKGVITRIEPSLEACFVNYGEE 63
           +L N T QE  RVA+V    + ++ IE T       NIY G + R+ P +++ F++ G E
Sbjct: 5   ILVNVTPQET-RVALVLQGAVQELHIERTLSRGMAGNIYLGKVVRVLPGMQSAFIDIGLE 63

Query: 64  RHGFLPFKEVARSYFKEGIDVRNASIKEALREGQEIIVQVEKEERGNKGAALTSFISLAG 123
           R  FL   ++  +   +G+      I+  L +GQ I VQV K+  G KGA L++ IS+AG
Sbjct: 64  RAAFLHVADIWDARSHDGLPTTPIPIERILFDGQSITVQVIKDPIGTKGARLSTQISIAG 123

Query: 124 RYLVLMPNNPRGGGVSRRVEGE-DRQELRETMDKLDLPNGMS--VIARTAGIGRNVDELQ 180
           R LV +P     G +S+R+E E +R+ LRE + KL +  G     I RT     +  +LQ
Sbjct: 124 RMLVYLPQESHIG-ISQRIENEVERELLREKVQKL-MQEGEKGGFIIRTMAEDASDHDLQ 181

Query: 181 WDLNYLMQLWRAIEGAGQSGSGAFLIYQESSLVIRAIRDYFQPDIGEILIDTDDIHDQAQ 240
            D++YL + W  I    ++     L+YQ+  L  R +RD+   +   I +D+ +   + Q
Sbjct: 182 MDVDYLRKTWSNITQLAKTKPAPSLLYQDLDLAQRVMRDFVNDETASIQVDSRENFQKLQ 241

Query: 241 QFMAHVMPDMVHRVKRYRDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVSV 300
           QF     P ++ ++  Y  + PLF  + +E +I+ A  R V L SGG +++D TEA+ ++
Sbjct: 242 QFGELYTPSVLTKLAHYPGERPLFDLYGVEEEIQRALGRRVDLKSGGYLIVDQTEAMTTI 301

Query: 301 DVNSARATRGSDIETTAFNTNLEAADEVARQLRLRDLGGLIVIDFIDMENSKNQREVEGR 360
           DVN+     G + + T F TNLEA+  +ARQLRLR+LGG++++DFIDMEN +++  V   
Sbjct: 302 DVNTGSFVNGRNFDDTIFKTNLEASHAIARQLRLRNLGGMVILDFIDMENVEHRNAVLSE 361

Query: 361 LKDALHHDRARVQMGKISRFGLMELSRQRLRPSLSEGSHVTCPRCNGTGHIRDTESSALQ 420
           L  AL  DR +V +   S  GL+E++R+R R SL+      CP C G G ++   +   +
Sbjct: 362 LNRALARDRTKVSVSGFSALGLVEMTRKRTRESLAHILCEPCPACGGKGQVKTARTICYE 421

Query: 421 VLRIIQEEAMKENSAAIHVQAPVDVAAFLLNEK 453
           +LR +  EA + N     + A   V    L E+
Sbjct: 422 ILRELTREAKQFNPREFRILASQVVIDMFLEEE 454


>gi|134095278|ref|YP_001100353.1| RNase E [Herminiimonas
            arsenicoxydans]
          Length = 973

 Score =  106 bits (264), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 80/195 (41%), Positives = 100/195 (51%), Gaps = 43/195 (22%)

Query: 924  APSIDASFAPTPAFEPVQAAVAAPAASEAPVEVVTAP--APVVPQQI------------- 968
            A  + ++ A T   E V     A  ASEAPV  +T+   AP++PQ++             
Sbjct: 779  ATEMASTVASTVRQETVAHVTEASIASEAPVSALTSAIAAPLIPQEVMPQAEPEVAAPVV 838

Query: 969  ----------------------SLLDAVEASPA-----VVAEASAPV-APAPVVAAPAAP 1000
                                       VEA PA     V A   AP+  PAPV+A   AP
Sbjct: 839  AVPAAPAPEPEPVVAAPAFVAVEAAPVVEAVPAIEPAPVAAVTPAPMPQPAPVIAPVPAP 898

Query: 1001 AAATPPAAAGNGAQWDSLQQMLSHAGLTLATTDPVKLRAAQEAAAAIVPAPRVPRERKPL 1060
             A    A A + ++ D L ++L  AGL LA+TDP KLRAAQE AA  VP PRVPRERKPL
Sbjct: 899  VATVSAAPAASTSKVDDLSEVLQSAGLVLASTDPEKLRAAQEEAAKFVPPPRVPRERKPL 958

Query: 1061 PPQSSEPLVQVETRR 1075
            PPQS+EPLVQ+ET+R
Sbjct: 959  PPQSTEPLVQMETKR 973


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.312    0.129    0.360 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 1,160,707
Number of extensions: 41306
Number of successful extensions: 132
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 128
Number of HSP's successfully gapped: 2
Length of query: 1075
Length of database: 1,000,347
Length adjustment: 92
Effective length of query: 983
Effective length of database: 697,207
Effective search space: 685354481
Effective search space used: 685354481
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 134 (56.2 bits)