BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1746.p
         (133 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095281|ref|YP_001100356.1| putative globin [Herminiimonas ...   178   8e-47

>gi|134095281|ref|YP_001100356.1| putative globin [Herminiimonas
           arsenicoxydans]
          Length = 133

 Score =  178 bits (452), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 82/130 (63%), Positives = 99/130 (76%)

Query: 1   MQIEDPNQPTTFELIGGAEKLREMVDRFYDLMDLEPEFAGIRALHPPSLEASREKTYMFL 60
           M  E+  Q T +EL+ GA  LR +VDRFYDLMDLEP FAGIR +HP +L+ SR+K + FL
Sbjct: 1   MTTEENQQHTLYELLDGASGLRALVDRFYDLMDLEPAFAGIRGMHPTTLDGSRDKLFWFL 60

Query: 61  SGWTGGPSLYMEKFGHPRLRARHLPFPIGISERDQWLRCMTWAMQDVGLPEDLMKRLLAA 120
           SGWTGGP+L++E+FGHPRLRARHLP+ I   ERDQWLRCM  AMQDVG+   L + L  A
Sbjct: 61  SGWTGGPNLFVERFGHPRLRARHLPYAIATDERDQWLRCMEMAMQDVGIVPSLQEHLQKA 120

Query: 121 LYQTADWMRN 130
             +TADWMRN
Sbjct: 121 FAETADWMRN 130


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.322    0.139    0.444 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 298,254
Number of extensions: 12218
Number of successful extensions: 29
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 29
Number of HSP's successfully gapped: 1
Length of query: 133
Length of database: 1,000,347
Length adjustment: 72
Effective length of query: 61
Effective length of database: 763,107
Effective search space: 46549527
Effective search space used: 46549527
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 124 (52.4 bits)