BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1741.p
         (219 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093846|ref|YP_001098921.1| putative homoserine/homoserine ...   222   1e-59

>gi|134093846|ref|YP_001098921.1| putative homoserine/homoserine
           lactone efflux protein [Herminiimonas arsenicoxydans]
          Length = 259

 Score =  222 bits (566), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 133/217 (61%), Positives = 161/217 (74%), Gaps = 5/217 (2%)

Query: 1   MAYQTWITFFFAACVIAISPGSGAVLSMSHGLNYGVRRTSATILGLEVALVVVLVIAGAG 60
           M    W+TF  AA VIA+SPGSGAVLSMSHGL+YGV++T+ TI+GL+  L+++L+IAGAG
Sbjct: 45  MTLTLWLTFLVAAVVIAVSPGSGAVLSMSHGLSYGVKKTTGTIIGLQAGLILLLLIAGAG 104

Query: 61  VGSLLVASEPAFNAVKIAGALYLIYLGFSQWRAPVPTEQEGEAIDAANAVARAQRGQAWW 120
           VGSLL+ASE AFN VK  GALYLIYLG++QWRA V    +  A      VA      +W 
Sbjct: 105 VGSLLLASEVAFNIVKTVGALYLIYLGWNQWRAKVTIPPDVRA-----PVATPTHVPSWR 159

Query: 121 QRCITGFLTNATNPKGIVFMVAVLPQFIDHERPLGLQLLVLGLTMVAVDVVVMHGYAFAA 180
           +R + GF TNATNPKG++FMVAVLPQFI    PL  QLL+L LTM  +DV+VMH YA AA
Sbjct: 160 KRFLLGFFTNATNPKGVIFMVAVLPQFIVQSAPLLPQLLILALTMCTIDVIVMHAYALAA 219

Query: 181 SRLQRFFRSQKALKAQNRFFGGVLMLVGAGLFFVKRT 217
           S +QRFF    A+K QNRFFGG+LM +GAGLFFVKR 
Sbjct: 220 SAMQRFFHDAHAVKKQNRFFGGLLMAIGAGLFFVKRN 256


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.328    0.139    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 341,850
Number of extensions: 10485
Number of successful extensions: 50
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 49
Number of HSP's successfully gapped: 2
Length of query: 219
Length of database: 1,000,347
Length adjustment: 78
Effective length of query: 141
Effective length of database: 743,337
Effective search space: 104810517
Effective search space used: 104810517
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 127 (53.5 bits)