BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1738.p
         (468 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094514|ref|YP_001099589.1| hypothetical protein HEAR1289 [...   467   e-133

>gi|134094514|ref|YP_001099589.1| hypothetical protein HEAR1289
           [Herminiimonas arsenicoxydans]
          Length = 465

 Score =  467 bits (1201), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 246/435 (56%), Positives = 300/435 (68%), Gaps = 7/435 (1%)

Query: 36  LAVAYSGGLDSTVLLQVAAQWAQDSGGQVVALHVHHGLSANADAWLAHAQAFCAQRGVLC 95
           +A+AYSGGLDS  LL +   +A   G ++ A HVHHGLS NAD WLAH Q  CA  GV  
Sbjct: 34  IAIAYSGGLDSAALLYLLRAYATQHGLELFAFHVHHGLSLNADQWLAHCQQQCAGLGVAF 93

Query: 96  ASERVQVANVAETGIEEAARLARYAALGRLCRQHGAPLLLTAHHLDDQAETVLLQLLRGS 155
            + RVQ+AN  ++G+EEAAR +RYAALG +CR H  PLLLTAHH DDQAETVLLQLLRGS
Sbjct: 94  DARRVQIANQDKSGVEEAARHSRYAALGEMCRAHDVPLLLTAHHQDDQAETVLLQLLRGS 153

Query: 156 GLAGMSGMDHCNTAPGLLGDAHTLVVRPFLGVPRAQLEAVARALALVWIEDESNQDPRYT 215
           G+AG+SGMD  N A  LLGDA  L+ RP L + RA LE +  + A+ ++EDESN DPRY 
Sbjct: 154 GVAGLSGMDSVNHAADLLGDATLLMGRPLLQLARADLEKIVTSNAIAFVEDESNLDPRYA 213

Query: 216 RNALRHQVMPTLGQVFPGYQQRLARAAGHAQGAQELLREVAQQDLAQCRQDDHLLMPALR 275
           RNALRHQVMPTL Q FPG+QQR AR A HAQ AQ LL E+A QDL  C   D L +  LR
Sbjct: 214 RNALRHQVMPTLAQHFPGFQQRFARTAQHAQSAQRLLIELAAQDLTVCLDGDCLDITKLR 273

Query: 276 GLSEQRFLNLMRHWFALRGMRMPSAAWMQEMRSQLLQADVEAQLCVSHPDGEVHRYRERV 335
             S  R  +++R+WF  RG+RMPS +W+ EMR+QLL+A  +AQLCV+H D  + R+R+RV
Sbjct: 274 QFSTDRIDSMLRYWFGSRGVRMPSTSWLNEMRTQLLEAKHDAQLCVTHADCHIRRHRDRV 333

Query: 336 FLAPR-RIAPDEGASLSLRWEGQAQVRVAAFYGTLHFDSIASDEVRPGLDATWLRSQALL 394
           +L P+   A  E A L+ RW+G   ++ A F GTL F     +E   G+ A WLR QAL 
Sbjct: 334 YLTPKLDPASLEQAPLAFRWDGTTAMQFAEFGGTLFF-----EEAEQGVSAEWLRGQALT 388

Query: 395 VCGRSGGERIKLGVNRPARSLKQQYQSADVPAWERPFLPLVWAGETLLFAAGIGMDSAHL 454
           +  RSGGER+K   NRP +SLK  YQ+ DVPAWER  LPLV+A + LLFAAGIGMD    
Sbjct: 389 MQLRSGGERLKPAWNRPTKSLKYHYQAGDVPAWERERLPLVFAEKQLLFAAGIGMDCHSF 448

Query: 455 VT-SGERIALRWQPD 468
            T +G  I LRWQ D
Sbjct: 449 STQAGTHIQLRWQFD 463


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.321    0.133    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 898,939
Number of extensions: 36171
Number of successful extensions: 116
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 113
Number of HSP's successfully gapped: 1
Length of query: 468
Length of database: 1,000,347
Length adjustment: 85
Effective length of query: 383
Effective length of database: 720,272
Effective search space: 275864176
Effective search space used: 275864176
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)