BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1736.p
         (219 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094512|ref|YP_001099587.1| putative DNA-3-methyladenine gl...   317   3e-88
gi|134093400|ref|YP_001098475.1| DNA glycosylase [Herminiimonas ...    62   2e-11

>gi|134094512|ref|YP_001099587.1| putative DNA-3-methyladenine
           glycosylase II [Herminiimonas arsenicoxydans]
          Length = 191

 Score =  317 bits (812), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 151/190 (79%), Positives = 172/190 (90%), Gaps = 1/190 (0%)

Query: 28  MKRDRIMRKIIPQFGDLQLTVRGDAFTTLARSVIGQQISTKAANAVWQRFLQACPRCTPG 87
           MKRDRIMRK+IPQFGDL L  RG+ F+TLARS+IGQQIS KAA++VWQRFL+ CP+CTP 
Sbjct: 1   MKRDRIMRKLIPQFGDLHLASRGEPFSTLARSIIGQQISVKAADSVWQRFLEICPKCTPV 60

Query: 88  QVIRTGPEGLAACGLSKRKAEYILDLAAHFKAKTVHPDKWAEMEDEAVIAEMIQIRGIGR 147
           QVI+ G + LA+CGLSKRK+EYILDLA HFKAK V+ DKWAEMEDE VIA++IQIRGIGR
Sbjct: 61  QVIKAG-DKLASCGLSKRKSEYILDLADHFKAKRVNCDKWAEMEDEDVIADLIQIRGIGR 119

Query: 148 WTAEMFLIFNLLRPNVLPLDDLGLLKGISISYFSGEPVSRSDAREVAANWEPWRTVATWY 207
           WTAEMFLIFNLLRPN+LPLDD+GLL GIS +YFSGEPVSRSDAREVAANWEP+RTVATWY
Sbjct: 120 WTAEMFLIFNLLRPNILPLDDVGLLAGISRNYFSGEPVSRSDAREVAANWEPYRTVATWY 179

Query: 208 LWRSLDPLPS 217
           LWRSLD + +
Sbjct: 180 LWRSLDAVSA 189


>gi|134093400|ref|YP_001098475.1| DNA glycosylase [Herminiimonas
           arsenicoxydans]
          Length = 500

 Score = 62.4 bits (150), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 61/217 (28%), Positives = 92/217 (42%), Gaps = 25/217 (11%)

Query: 9   DADPSLIVPAYWEDAKAELMKRDRIMRKIIPQFGDLQLTVRGDAFTTLARSVIGQQISTK 68
           DA+P +I         A  +  D ++ K I +   L++    D F   +R+V+GQQ+S  
Sbjct: 295 DANPQVI---------AAHLASDALLAKQIVRTPGLRVPGAFDVFELASRAVLGQQVSVA 345

Query: 69  AANAVWQRFLQACPRCTP---GQVIRTGP----------EGLAACGLSKRKAEYILDLAA 115
            A  +  R +      T      V    P            +AA GL   +AE I +LA 
Sbjct: 346 GATTLSGRLVGKFGIATDTPFAGVTHHFPLAERLAAASATEIAAIGLPVARAEAIRNLAQ 405

Query: 116 HFKAKTVHPDKWAEMEDEAVIAEMIQIRGIGRWTAEMFLIFNLLRPNVLPLDDLGLLKGI 175
                 +       + D  V+A +  +RGIG WTA+   +  L   +  P  DLGL K  
Sbjct: 406 FAAQGGLKIKVGTSLPD--VVAHLKTVRGIGEWTAQYIAMRVLRYTDAFPAGDLGLQKA- 462

Query: 176 SISYFSGEPVSRSDAREVAANWEPWRTVATWYLWRSL 212
           +I +  G  ++     + AA W PWR  A   LW+SL
Sbjct: 463 AIEFDDGVRLTEKQLLQRAAGWSPWRGYAALLLWQSL 499


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.321    0.135    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 420,936
Number of extensions: 15961
Number of successful extensions: 49
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 46
Number of HSP's successfully gapped: 2
Length of query: 219
Length of database: 1,000,347
Length adjustment: 78
Effective length of query: 141
Effective length of database: 743,337
Effective search space: 104810517
Effective search space used: 104810517
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 127 (53.5 bits)