BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1733.p
         (514 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094135|ref|YP_001099210.1| hypothetical protein HEAR0899 [...   228   5e-61

>gi|134094135|ref|YP_001099210.1| hypothetical protein HEAR0899
           [Herminiimonas arsenicoxydans]
          Length = 380

 Score =  228 bits (582), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 116/189 (61%), Positives = 147/189 (77%), Gaps = 11/189 (5%)

Query: 8   QTSIHGLRGLIGKTAHKTAVLSSLVAALFAGPASLAHASEMSDINKLMRAGQYAEALTRT 67
            T   GLR +  +     A++ SL A L A P     A E+SD+++L+RAGQ+  AL + 
Sbjct: 7   HTFNSGLRYVWSR-----ALILSL-AGLCAFPV---MADELSDVSQLLRAGQHGAALAKA 57

Query: 68  DAVLAKHPRDAQLRFTKGLILAEQNRSAEAIAVFTKLTEDFPDLPEPYNNLAVLYAADGQ 127
           DA L ++PRDAQ+RF KG+IL EQN+SAEAI +F+KLT+D+P LPEPYNNLAVLYA+ GQ
Sbjct: 58  DAFLNRNPRDAQMRFLKGVILTEQNKSAEAITIFSKLTDDYPTLPEPYNNLAVLYASSGQ 117

Query: 128 YDKARAALDMAMRTNPTYATALENLGDVYAKLASQAYDKALQIDPGANV-PQPKLTLLRS 186
           Y+KAR ALDMA+RTNPTYATA ENLGDV+AKLASQAYDKALQ+D  +NV  + KLT++R+
Sbjct: 118 YEKARTALDMAIRTNPTYATAYENLGDVHAKLASQAYDKALQLD-NSNVGAKSKLTMVRT 176

Query: 187 LNGNTTGGT 195
           L GNT+GGT
Sbjct: 177 LVGNTSGGT 185



 Score =  152 bits (385), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 66/107 (61%), Positives = 84/107 (78%)

Query: 407 VLAALNGWAKSWSDKDVRGYLGHYASDFETPRGASRKEWAEERRARIEDKGRISVKVSNA 466
           V+ A+N WAK+WS +DV+ YL  YA+DF+ P G SRK W +ERRARIEDK RISVK+   
Sbjct: 273 VMNAVNAWAKAWSARDVKAYLNAYANDFDLPAGQSRKTWTDERRARIEDKARISVKIETP 332

Query: 467 TVAINGNTATVRYRQIYNSDRLTVDSRKTLIFVKQGNRWLIKQERSG 513
            V++NGNTATV++RQIY+SDR   +SRKTL+ VKQ  +W IKQER+G
Sbjct: 333 QVSLNGNTATVKFRQIYDSDRTKANSRKTLVMVKQSGKWHIKQERAG 379


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.307    0.119    0.308 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 564,378
Number of extensions: 19566
Number of successful extensions: 81
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 81
Number of HSP's successfully gapped: 2
Length of query: 514
Length of database: 1,000,347
Length adjustment: 86
Effective length of query: 428
Effective length of database: 716,977
Effective search space: 306866156
Effective search space used: 306866156
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 131 (55.1 bits)