BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1732.p
         (399 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094136|ref|YP_001099211.1| hypothetical protein HEAR0900 [...   480   e-137

>gi|134094136|ref|YP_001099211.1| hypothetical protein HEAR0900
           [Herminiimonas arsenicoxydans]
          Length = 420

 Score =  480 bits (1236), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 225/405 (55%), Positives = 303/405 (74%), Gaps = 8/405 (1%)

Query: 1   MLCLAAMPAMGSVASSSSIPP-----QGNTAGAPTAKPDPEALLIDIYKDLGANRLREAQ 55
           M C     A+G + + ++  P      G+  G P A+ DPE +LID+YK L ANRLR+AQ
Sbjct: 15  MGCWTGAAALGLLIAGAAAWPLPSFASGSKPGIP-ARLDPEVMLIDVYKALAANRLRDAQ 73

Query: 56  AKADALVAAYPTFRLGHLVRGDLLLMHARPVRNFGAMADGPADKLQELRDEAMVRIRSLQ 115
           AKADALVAAYPTFRLGHLVRGDLLL+H +P++ FGA ++ PA+KL  LR EA+VR++SL+
Sbjct: 74  AKADALVAAYPTFRLGHLVRGDLLLLHTQPIKTFGAASNAPAEKLNNLRAEAIVRLKSLR 133

Query: 116 EKPDPNLIPKSVLQVGDDQKNVLVVDTTRSRMYVYENQDGDLKYMTDYYISQGRLGANKT 175
           E+PDPNLIP+  LQ+  DQK +L+VD  RSR+YVYE     +K ++DYY+SQG+LG +K 
Sbjct: 134 ERPDPNLIPRVFLQMRADQKKLLLVDAKRSRLYVYERSKDQVKLVSDYYVSQGKLGVDKL 193

Query: 176 KSGDQRTPIGVYYVNNRIPGPKLPDFYGTGALPLSYPNEWDKRNGRSGYGIWLHGTPSDN 235
           K GDQ+TP+GVYY+  R+ G +LP+FYG GALP++YPNEWDK NGR G GIWLHGTPSD+
Sbjct: 194 KEGDQKTPLGVYYITARLDGARLPEFYGPGALPINYPNEWDKANGRGGSGIWLHGTPSDS 253

Query: 236 FSRPPLSSDGCVVLANPDLQSLYSTAEVGKTVVVISQNVQFVNKNSLTKERDAASAMLEQ 295
           +SRPPLSSDGCVVL NPDL+ L ++ E+G T V+IS++++FV+K     +R +A+ MLE 
Sbjct: 254 YSRPPLSSDGCVVLTNPDLKELSASVEIGNTPVIISEDLKFVSKEKWEADRLSANKMLEA 313

Query: 296 WSQSLEDADADKVLSYYSPEFRSAQGENLATWFGRQQKSLNGARYTSVKLRDVSLFRYPG 355
           W   +E  D D++  +YS  F++A+G+NL  W  + Q+S  GAR  +V+LRDV+LFRYP 
Sbjct: 314 WRLDIESTDPDRLRRHYSRSFKAARGQNLDGWLTKIQQSTLGARKINVELRDVTLFRYPD 373

Query: 356 APE--DMIVSTFTQESAVGKSKNAIRKRQYWVREGSQWKIIYEGN 398
             +  ++IV+ FTQE+ +GK K+  RKRQYW REG+QWKI+ E N
Sbjct: 374 QKDQKELIVAAFTQEALIGKGKHITRKRQYWAREGAQWKIVSEVN 418


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.315    0.132    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 802,459
Number of extensions: 33911
Number of successful extensions: 89
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 88
Number of HSP's successfully gapped: 1
Length of query: 399
Length of database: 1,000,347
Length adjustment: 84
Effective length of query: 315
Effective length of database: 723,567
Effective search space: 227923605
Effective search space used: 227923605
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 130 (54.7 bits)