BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1731.p
         (189 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094509|ref|YP_001099584.1| peptidyl-prolyl cis-trans isome...   261   1e-71
gi|134094508|ref|YP_001099583.1| peptidyl-prolyl cis-trans isome...   218   2e-58

>gi|134094509|ref|YP_001099584.1| peptidyl-prolyl cis-trans
           isomerase B [Herminiimonas arsenicoxydans]
          Length = 192

 Score =  261 bits (667), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 129/193 (66%), Positives = 150/193 (77%), Gaps = 5/193 (2%)

Query: 1   MILSRRHLLRMAAALSLSTTLAAPVLAADAPHVLLKTSMGNITLELNPEKAPVSVDNFLK 60
           M  SRR  L +A ALSLS TL     A DAP VLLKT+MG+I LELN +KAP +VDNFL+
Sbjct: 1   MKFSRRRALSIAFALSLSGTLQL-AHATDAPRVLLKTNMGDIVLELNQDKAPKTVDNFLQ 59

Query: 61  YVKKGQYNGTVFHRVINGFMIQGGGYDQNMREKPTDAPIKNEANNGLKNEVYTVAMARTA 120
           YVK GQYNGT+FHRVI  FMIQGGG+D++MREK T API+NEA NGLKN++YT+AMART 
Sbjct: 60  YVKSGQYNGTIFHRVIADFMIQGGGFDKDMREKVTRAPIQNEAQNGLKNDIYTIAMARTG 119

Query: 121 APHSATAQFFINVADNRFLNYPGQDGWGYAVFGKVIAGADVVDKIKQVRTG----AGDVP 176
            PHSATAQFFIN   N  LNYPGQDGWGY VFGKV+ G +VV+KIKQV TG      +VP
Sbjct: 120 NPHSATAQFFINTQTNNMLNYPGQDGWGYTVFGKVVKGTEVVNKIKQVNTGNRGPHQNVP 179

Query: 177 TTPVVIESATVIK 189
             PV+IESAT+ +
Sbjct: 180 AQPVIIESATITQ 192


>gi|134094508|ref|YP_001099583.1| peptidyl-prolyl cis-trans
           isomerase B [Herminiimonas arsenicoxydans]
          Length = 162

 Score =  218 bits (554), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 101/160 (63%), Positives = 127/160 (79%), Gaps = 4/160 (2%)

Query: 33  VLLKTSMGNITLELNPEKAPVSVDNFLKYVKKGQYNGTVFHRVINGFMIQGGGYDQNMRE 92
           V+L T+ G IT+EL+ EKAP +V+NFL YV  G Y GT+FHRVI+GFMIQGGG++  M++
Sbjct: 3   VILTTNHGKITIELDAEKAPKTVENFLAYVNSGHYAGTIFHRVIDGFMIQGGGFEPGMKQ 62

Query: 93  KPTDAPIKNEANNGLKNEVYTVAMARTAAPHSATAQFFINVADNRFLNYPGQDGWGYAVF 152
           KPT+ P++NEA NGLKN++YT+AMART+APHSA+AQFFIN+ +N FL+YPGQDGWGY VF
Sbjct: 63  KPTNDPVENEAKNGLKNDMYTLAMARTSAPHSASAQFFININNNSFLDYPGQDGWGYCVF 122

Query: 153 GKVIAGADVVDKIKQVRTGA----GDVPTTPVVIESATVI 188
           GKV  G DVV+KIK V+T       DVP   V+IE A VI
Sbjct: 123 GKVTDGTDVVEKIKSVKTTRSGMFADVPVEDVIIEKAEVI 162


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.318    0.133    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 318,668
Number of extensions: 13003
Number of successful extensions: 36
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 34
Number of HSP's successfully gapped: 2
Length of query: 189
Length of database: 1,000,347
Length adjustment: 77
Effective length of query: 112
Effective length of database: 746,632
Effective search space: 83622784
Effective search space used: 83622784
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 126 (53.1 bits)