BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1729.p
         (263 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094507|ref|YP_001099582.1| UDP-2,3-diacylglucosamine hydro...   301   3e-83

>gi|134094507|ref|YP_001099582.1| UDP-2,3-diacylglucosamine
           hydrolase (partial) [Herminiimonas arsenicoxydans]
          Length = 270

 Score =  301 bits (770), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 148/257 (57%), Positives = 180/257 (70%), Gaps = 1/257 (0%)

Query: 8   QKAQP-TVALFVSDLHLQAGLPRTTEAFLAFLQSHAVQTQQLYLLGDVFEYWAGDDDLTA 66
           Q+AQP T ALFVSDLHLQA +PRTT+AF  FL  HA +T+QLYLLGD+FE WAGDDD+  
Sbjct: 13  QQAQPETAALFVSDLHLQAVMPRTTQAFFDFLHRHASKTRQLYLLGDIFEAWAGDDDMAD 72

Query: 67  PYNQLIADALKTVQVQGVQLYWMAGNRDFLVGQGFATAAGLTLLDDPHVVTLAGRTLALA 126
            YN+ +   LK +   G+ ++WMAGNRDFLVGQ FA   G+TLL DP V T+A R L L 
Sbjct: 73  AYNRQVVSRLKQLSDDGIAIFWMAGNRDFLVGQEFAATTGITLLPDPFVTTIANRPLVLT 132

Query: 127 HGDAQCTDDLAYMAFRAQVRQPAYQQQFLAMPLAQRKAIIEGIRKNSQDANQSKEMAIMD 186
           HGDA CTDD AYM FRAQVRQ  +Q+ FLA+PL QRK IIE +R  S+ A + K   IMD
Sbjct: 133 HGDAYCTDDEAYMQFRAQVRQDEWQKNFLALPLTQRKNIIESLRAGSRAAQRDKSYDIMD 192

Query: 187 VNAGAIDALFAQTGTDVLIHGHTHRPALHRLGEGEQCKLRYVLPDWEYDVATPRGGWISL 246
           VN  AI  LF+Q+ +  +IHGHTHRPA H      Q + RYVL DW+ D A PRG W++L
Sbjct: 193 VNKTAIATLFSQSASATMIHGHTHRPARHDETHDGQTRTRYVLSDWDLDGAVPRGDWLAL 252

Query: 247 TADGVLHRHDVDGHEIA 263
            A G + RH ++G  IA
Sbjct: 253 DAAGQITRHALNGAVIA 269


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.322    0.136    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 530,486
Number of extensions: 21811
Number of successful extensions: 68
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 68
Number of HSP's successfully gapped: 1
Length of query: 263
Length of database: 1,000,347
Length adjustment: 80
Effective length of query: 183
Effective length of database: 736,747
Effective search space: 134824701
Effective search space used: 134824701
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 128 (53.9 bits)