BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1728.p
         (252 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094505|ref|YP_001099580.1| serine acetyltransferase [Hermi...   372   e-105
gi|134093968|ref|YP_001099043.1| putative O-acetyltransferase [H...    68   4e-13

>gi|134094505|ref|YP_001099580.1| serine acetyltransferase
           [Herminiimonas arsenicoxydans]
          Length = 247

 Score =  372 bits (955), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 180/252 (71%), Positives = 209/252 (82%), Gaps = 5/252 (1%)

Query: 1   MFSRLREDIASIRARDPAARNSWEVLTCYPGLHAVILHRWAQACWNAELKWLGRFISQLG 60
           MFSR++EDIA+I ARDPAAR+ WEV+TCYPGLHA+++ RWA   W  +LKWLGRF S + 
Sbjct: 1   MFSRIKEDIANIIARDPAARSVWEVITCYPGLHAIVMQRWAHWFWVNDLKWLGRFTSHIA 60

Query: 61  RTLTGIEIHPGATIGRRVFIDHGMGVVIGETAIVGDDSTIYQGVTLGGTSLTKGAKRHPT 120
           R LTGIEIHPGA IGRRVFIDHG GVVIGETA +GDD TIYQGVTLGGTSL+KGAKRHPT
Sbjct: 61  RWLTGIEIHPGAKIGRRVFIDHGFGVVIGETAEIGDDCTIYQGVTLGGTSLSKGAKRHPT 120

Query: 121 LGRGVIIGAGAKVLGGFTVGDGAKVGSNAVVTKEVPAGATAVGNPARIVERNTAQAGERE 180
           LG GVIIGAGA+VLG FTVG+GAKVGSNAVV KEVPAGATAVGNPARI+ ++     +  
Sbjct: 121 LGNGVIIGAGAQVLGAFTVGEGAKVGSNAVVVKEVPAGATAVGNPARIILKD-----DTR 175

Query: 181 QQAAARLFAAYGVMPNGDDPLSKALHGLINQVAAQEQQLEAVLAALQGAGIGCRRMEEAG 240
            QAAAR+FA+YGV PNGDDPLSKALHGLI+  A QE Q+E +LAAL+ AGI C  +  A 
Sbjct: 176 DQAAARMFASYGVTPNGDDPLSKALHGLIDNAATQEHQIEKILAALKCAGIDCETLPAAE 235

Query: 241 QFDAAQLNRLVD 252
           +FD  Q+N+LV+
Sbjct: 236 KFDQEQMNKLVE 247


>gi|134093968|ref|YP_001099043.1| putative O-acetyltransferase
           [Herminiimonas arsenicoxydans]
          Length = 176

 Score = 67.8 bits (164), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 45/118 (38%), Positives = 67/118 (56%), Gaps = 3/118 (2%)

Query: 58  QLGRTLTGIEIHPGATIGRRVFIDHGMGVVIGETAIVGDDSTIYQGVTLGGTSLTKGAKR 117
           +L  T  GI +   A IG  + I H  G+ +     +G + T+ QGVT+G   +  G   
Sbjct: 62  RLLETAVGISLPKAAVIGPGLRIWHFGGIFLHPDVRIGANCTLRQGVTIG-NRVADGPV- 119

Query: 118 HPTLGRGVIIGAGAKVLGGFTVGDGAKVGSNAVVTKEVPAGATAVGNPARIVERNTAQ 175
            P +G  V  GA A+VLGG  +G+G  +G+ +VV  +VP GATAVG PAR++ ++  Q
Sbjct: 120 -PVIGDDVDFGAYAQVLGGVRIGNGCHIGALSVVLCDVPDGATAVGVPARVILKSGVQ 176


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.319    0.136    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 463,242
Number of extensions: 19526
Number of successful extensions: 78
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 73
Number of HSP's successfully gapped: 2
Length of query: 252
Length of database: 1,000,347
Length adjustment: 80
Effective length of query: 172
Effective length of database: 736,747
Effective search space: 126720484
Effective search space used: 126720484
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 127 (53.5 bits)