BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1727.p
         (245 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094504|ref|YP_001099579.1| tRNA (guanosine-2'-O-)-methyltr...   422   e-120
gi|134094575|ref|YP_001099650.1| putative tRNA/rRNA methyltransf...    77   1e-15

>gi|134094504|ref|YP_001099579.1| tRNA
           (guanosine-2'-O-)-methyltransferase [Herminiimonas
           arsenicoxydans]
          Length = 247

 Score =  422 bits (1086), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 203/243 (83%), Positives = 225/243 (92%)

Query: 1   MKSKMIFGFHAVTSRIRHEASSVEEIYVDAERRDRRMLDLLHAAKEANVRIIQADDQRLG 60
           MKSKMIFGFHAVT+R+RHEASSVEEIY+DA R D+RM DL+ AA+ A VRII ADD RL 
Sbjct: 1   MKSKMIFGFHAVTARLRHEASSVEEIYIDASRHDQRMKDLIRAAEAAKVRIIAADDARLS 60

Query: 61  AMVGTRRHQGVVAKAAALSLARTLDELLDAVVGPPLLLILDGITDPHNLGACLRVADGAG 120
           ++VGTRRHQGVVAKA  LSLAR LDELLDA+ GPPLLL+LDGITDPHNLGACLRVADGAG
Sbjct: 61  SIVGTRRHQGVVAKAGELSLARNLDELLDAIDGPPLLLVLDGITDPHNLGACLRVADGAG 120

Query: 121 AHAVIAPKDRAVGLNATAMKVSSGASDTVPYITVTNLARTMRDLKERGVWIIGTSDDAEK 180
           AHAVIAPKDRAVGLNATA KV+SGA+DTVPYITVTNLART+R+LKER + +IGT+DD+EK
Sbjct: 121 AHAVIAPKDRAVGLNATAAKVASGAADTVPYITVTNLARTLRELKERDILLIGTTDDSEK 180

Query: 181 GLYEGDFTGPTALVMGSEGEGMRRLTRETCDVLVNIPMFGSVESLNVSVASGVCLYEARR 240
           GLYE DF+GP AL+MGSEGEGMRRLTRETCDVLV+IPMFGSVESLNVSVASGVCLYEARR
Sbjct: 181 GLYEADFSGPAALIMGSEGEGMRRLTRETCDVLVSIPMFGSVESLNVSVASGVCLYEARR 240

Query: 241 QRL 243
           QR+
Sbjct: 241 QRI 243


>gi|134094575|ref|YP_001099650.1| putative tRNA/rRNA
           methyltransferase [Herminiimonas arsenicoxydans]
          Length = 265

 Score = 76.6 bits (187), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 45/144 (31%), Positives = 67/144 (46%), Gaps = 3/144 (2%)

Query: 98  LILDGITDPHNLGACLRVADGAGAHAVIAPKDRAVGLNATAMKVSSGASDTVPYITVTNL 157
           ++LD + DP N G+ +R A  AG   V          +   M+   GA   +      +L
Sbjct: 120 VLLDRVQDPGNFGSIVRSAAAAGIKQVFCSAGTTFAWSPKVMRAGMGAHFLMEIFENVDL 179

Query: 158 ARTMRDLKERGVWIIGTSDDAEKGLYEGDFTGPTALVMGSEGEGMRRLTRETCDVLVNIP 217
                 +    + +I TS  AEK LY+ D T P A + G EG+G+           + IP
Sbjct: 180 EAL---IARADIPVIATSSHAEKRLYDLDLTQPVAWLFGHEGQGVTEHLLALATHQITIP 236

Query: 218 MFGSVESLNVSVASGVCLYEARRQ 241
             G++ESLNV+ +S VC +E  RQ
Sbjct: 237 HLGAIESLNVAASSAVCFFEQVRQ 260


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.320    0.135    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 449,455
Number of extensions: 18299
Number of successful extensions: 77
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 76
Number of HSP's successfully gapped: 2
Length of query: 245
Length of database: 1,000,347
Length adjustment: 79
Effective length of query: 166
Effective length of database: 740,042
Effective search space: 122846972
Effective search space used: 122846972
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 127 (53.5 bits)