BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1726.p
         (829 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094503|ref|YP_001099578.1| RNase R, 3'-5' exoribonuclease ...  1264   0.0  

>gi|134094503|ref|YP_001099578.1| RNase R, 3'-5' exoribonuclease
           [Herminiimonas arsenicoxydans]
          Length = 776

 Score = 1264 bits (3272), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 607/746 (81%), Positives = 670/746 (89%), Gaps = 7/746 (0%)

Query: 46  RRLNAMERDGQIKPDRAGHYKLTHSPDFILGRVSSHRDGFGFLLPDDGTDDLFLPEKEMQ 105
           RRLNAMERDGQIKPDR G+Y+L HS +FI GRVSSHRDGFGFL+PDD + D+FLPEKEMQ
Sbjct: 2   RRLNAMERDGQIKPDRTGNYQLAHSSNFIEGRVSSHRDGFGFLIPDDASADIFLPEKEMQ 61

Query: 106 KVMHGDRVQARIVGTDRRGRPEGTIVEVVERANTHVIGRLLNENGVWVVAPEDKRIGHDV 165
           KV+HGDRVQARI+GTDRRGRPEGTIVEVV RANTHVIGRLLNENGVW+VAPED+RIG D+
Sbjct: 62  KVLHGDRVQARIIGTDRRGRPEGTIVEVVARANTHVIGRLLNENGVWIVAPEDQRIGQDI 121

Query: 166 LLAGPPGKAKAGQVVSVELTEHPSRYTQPVGKIVEILGDIDDPGMEIEIAVRKYGVPHEF 225
           +L+G PG AK GQVVSVELTE PSR++QPVGKIVE+LGDIDDPGMEIEIAVRKYGVPHEF
Sbjct: 122 MLSGSPGNAKTGQVVSVELTEQPSRFSQPVGKIVEVLGDIDDPGMEIEIAVRKYGVPHEF 181

Query: 226 SDAAKKLSAKLPSEVKAADLKDRVDLRDVPLVTIDGEDARDFDDAVYCEPVKIGRAKGYR 285
           S+ AKK ++KLP EV+A DL DRVDLRDVPLVTIDGEDARDFDDAVYCEP KIGRA G+R
Sbjct: 182 SEEAKKAASKLPDEVRAIDLTDRVDLRDVPLVTIDGEDARDFDDAVYCEPCKIGRADGFR 241

Query: 286 LIVAIADVSHYVKPNDALDVDALERSTSVYFPRRVIPMLPEKLSNGLCSLNPDVDRLTLV 345
           LIVAIADVS+YVKPN+ LDVDALERSTSVYFPRRVIPMLPEKLSNGLCSLNP VDRLTLV
Sbjct: 242 LIVAIADVSNYVKPNEPLDVDALERSTSVYFPRRVIPMLPEKLSNGLCSLNPGVDRLTLV 301

Query: 346 CDAVITAKGEIKAYQFYPAVIHSAARLTYTEVASILANTKGPEAARRIGLVPHLTHLYEV 405
           CDAVIT KGEIKAYQFYPAV+HSAARLTYTEVA+IL NTKG EAA+R  LVPHL +L+ V
Sbjct: 302 CDAVITTKGEIKAYQFYPAVMHSAARLTYTEVAAILGNTKGIEAAKRPALVPHLLNLHGV 361

Query: 406 FQALLTARQARGAIDFETTETYIVCNAAGKIEKILPRTRNDAHRLIEECMLAANVCAADL 465
           ++ALL AR ARGAIDFETTETYIVCN  GKIE+ILPRTRN+AH+LIEECMLAANVCAADL
Sbjct: 362 YKALLQARHARGAIDFETTETYIVCNEVGKIEQILPRTRNEAHKLIEECMLAANVCAADL 421

Query: 466 LKRHDHPALYRIHAGPTKEKLTQLRTFLKQVGLHLGGGDTPSASDYAELMPKVKARPDAV 525
           L+RH HP+LYR+HA PTKEKL Q+RTFLKQVGL+L GGD PSASDYAELMPK+K RPDA+
Sbjct: 422 LERHKHPSLYRVHALPTKEKLNQVRTFLKQVGLNLPGGDKPSASDYAELMPKIKNRPDAL 481

Query: 526 LIQTMLLRSMQQAVYSPDNIGHFGLSYESYAHFTSPIRRYPDLLTHRAIKAVLQGKRYEP 585
           L+QTMLLRSMQQAVYSP+NIGHFGLSYE+YAHFTSPIRRYPDLLTHRAIKA+LQGKRY P
Sbjct: 482 LLQTMLLRSMQQAVYSPENIGHFGLSYEAYAHFTSPIRRYPDLLTHRAIKAILQGKRYTP 541

Query: 586 KGIDSGALNTSISPAARKAQALQRATDKAAGK-KPRGESALAIWEALGLHCSANERRADE 644
           KGID+ ALNT +S AARK    + A DKA GK + + E  LAIWEALG+HCSANERRADE
Sbjct: 542 KGIDTSALNTMLSSAARK----KHAQDKAEGKQREKAEGDLAIWEALGIHCSANERRADE 597

Query: 645 ASRDVEAWLKCYFIRDKLGEEFTGTISGVATFGIFVQLDALYIEGLVHVTELGADYFQYD 704
           ASRDVEAWLKCYFIRDKLGEEFTG ISGV TFGIFVQLD L+IEG+VHVTELGAD+F++D
Sbjct: 598 ASRDVEAWLKCYFIRDKLGEEFTGVISGVTTFGIFVQLDTLFIEGMVHVTELGADHFKFD 657

Query: 705 EARHELRGERTGIRYQLTDRVTVQVSRVDLDARKIDLSLVNEPGIRTLIKNEAKRAET-- 762
           E+RHELRGERTGIRYQLTDRVTVQVSRVDLDARKIDL LV EPGIRT++KNEA+RA+T  
Sbjct: 658 ESRHELRGERTGIRYQLTDRVTVQVSRVDLDARKIDLRLVTEPGIRTVLKNEARRADTEH 717

Query: 763 AARGKSAGSKPAARGKKAAASKPATA 788
             R K    K   +  + +A K ATA
Sbjct: 718 QQRTKKGEQKSEPKSARKSAVKAATA 743


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.317    0.135    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 1,525,667
Number of extensions: 65669
Number of successful extensions: 210
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 209
Number of HSP's successfully gapped: 1
Length of query: 829
Length of database: 1,000,347
Length adjustment: 90
Effective length of query: 739
Effective length of database: 703,797
Effective search space: 520105983
Effective search space used: 520105983
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 133 (55.8 bits)