BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1721.p (515 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134096243|ref|YP_001101318.1| methyl-accepting chemotaxis pro... 516 e-147 gi|134095756|ref|YP_001100831.1| methyl-accepting chemotaxis pro... 480 e-137 gi|134094299|ref|YP_001099374.1| methyl-accepting chemotaxis pro... 466 e-132 gi|134093365|ref|YP_001098440.1| methyl-accepting chemotaxis pro... 399 e-112 gi|134093903|ref|YP_001098978.1| methyl-accepting chemotaxis pro... 394 e-111 >gi|134096243|ref|YP_001101318.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 561 Score = 516 bits (1329), Expect = e-147, Method: Compositional matrix adjust. Identities = 302/518 (58%), Positives = 374/518 (72%), Gaps = 8/518 (1%) Query: 1 MQMKNMTIGTRLGLGFATILALMAMITGIGVWRLQEVSKLNDAMVNDALVKERLVNTFYK 60 MQ KN+ IG RLG+ F +L LMA +T +GV RLQ+V+K ++ +A +KERL + K Sbjct: 1 MQFKNLKIGVRLGMAFGLLLVLMAFMTVMGVLRLQDVAKAT-VLMEEATIKERLAQQWIK 59 Query: 61 SIEVNIGRIVAAAKNPDVEQQKFYKQQIMSVISKNNELVKRMDELFT---DEAGRAALNA 117 IE N R A + D EQ K +Q+ MS IS + K+ DEL T G+ L Sbjct: 60 GIETNTVRTFARVRTSDPEQDKILQQE-MSAISA--AVSKQQDELETLVVSAEGKKLLAT 116 Query: 118 INERRKSVLEANTEVFKEKDAGNEQAARKVVDEKLLPSTQLYIAAIEKLASMQAERIQIL 177 + E+R + +V ++A + + + K+ P+ YI ++E + + Q + Sbjct: 117 VAEKRATYTAIRDDVMNLREARGAELQNAIAN-KMKPAADAYIQSVEAVVNAQINNFEDA 175 Query: 178 TAQIDDLFQTARKVMIGLGLVALLLGVILAWSITRSITAPLHKAVEVASRVAKGQLDNCI 237 ++D ++Q+AR ++I LGLVAL LG++LAW +TRSIT PL AV VA VA G L I Sbjct: 176 KGRVDTIYQSARMLLIVLGLVALTLGIVLAWMLTRSITKPLDYAVSVARLVASGDLTGRI 235 Query: 238 EVRGGDETGQLMLALKDMNEKLVGIVSRVRQGTDTIATASTEIASGNLDLSDRTEQQASS 297 V DETGQL+ ALKDMN+ L +++VR G DTIATAS +IASGNLDLS RTE+QASS Sbjct: 236 TVDSKDETGQLLQALKDMNDSLTASITQVRSGVDTIATASNQIASGNLDLSSRTEEQASS 295 Query: 298 LEETASAMEELTSTVKQNADNARQANQLANSASEVAVQGGSVVSEVVATMGSINASSRKI 357 LEETAS+MEELTSTVKQNADNARQANQLA +AS VA +GG+VVS+VV TM IN S+RKI Sbjct: 296 LEETASSMEELTSTVKQNADNARQANQLAVTASGVAEKGGTVVSKVVDTMDGINTSARKI 355 Query: 358 VDIIAVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAAKEIKELI 417 VDII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSA+AAKEIK LI Sbjct: 356 VDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKTLI 415 Query: 418 GDSVGKVEAGSKLVEQAGATMDEVVASVRRVTDIVAEISSASQEQSDGIEQVNQAINLMD 477 DSV KV+ GSKLV +AG TM EVV SV+RVTDI+AEI +ASQEQS GIEQVNQAI MD Sbjct: 416 DDSVDKVDTGSKLVAEAGTTMVEVVDSVKRVTDIMAEIMAASQEQSAGIEQVNQAIGQMD 475 Query: 478 EATQQNAALVEQAAAAARQMQEQAASLSETVSVFRLQG 515 + TQQNAALVE+AAAAA + EQAA+L++ VS+F+L G Sbjct: 476 QVTQQNAALVEEAAAAAESLNEQAANLAQAVSIFKLDG 513 >gi|134095756|ref|YP_001100831.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 565 Score = 480 bits (1236), Expect = e-137, Method: Compositional matrix adjust. Identities = 295/520 (56%), Positives = 378/520 (72%), Gaps = 8/520 (1%) Query: 1 MQMKNMTIGTRLGLGFATILALMAMITGIGVWRLQEVSKLNDAMVNDALVKERLVNTFYK 60 M++ N+ IG RLGL FA +L LMA + IGVWRLQEV++ M +A +ERL ++ Sbjct: 1 MKITNLKIGVRLGLAFAVVLLLMASMMVIGVWRLQEVAQATVRM-EEAAEQERLSIQWHA 59 Query: 61 SIEVNIGRIVAAAKNPDVEQQKFYKQQIMSVISKNNELVKRMDELFTDEAGRAALNAINE 120 N R A ++ + E Q+ ++ ++ + + +L +++ L E G+ ++A+ + Sbjct: 60 GNSANAIRTTARIRSTNQEVQQQFQNEMTAQSVEITKLQNKLESLIHSEEGKKLMSAVGD 119 Query: 121 RRKSVLEANTEVFKEKDAGN---EQAARKVVDEKLLPSTQLYIAAIEKLASMQAERIQIL 177 +R ++ EVFK K G+ E+ A+K++ K+ P+ + Y ++ + Q ++ L Sbjct: 120 KRTVYMDIRKEVFKLKADGSPAAEEEAKKIIASKMDPALETYSKTVQDVVDFQ--QVTFL 177 Query: 178 TA--QIDDLFQTARKVMIGLGLVALLLGVILAWSITRSITAPLHKAVEVASRVAKGQLDN 235 A ++D+L+ + R ++ LG +AL L +LAW ++RSIT PL AVEVA VA G L N Sbjct: 178 EAKTEVDNLYASGRMFLLTLGAIALALSALLAWLLSRSITRPLEYAVEVARTVAGGDLRN 237 Query: 236 CIEVRGGDETGQLMLALKDMNEKLVGIVSRVRQGTDTIATASTEIASGNLDLSDRTEQQA 295 IEV DETGQL+ AL+DMN+ LV VS VR G +TIATAS +IA+GNLDLS RTE+QA Sbjct: 238 RIEVNSSDETGQLLQALRDMNDGLVKSVSEVRTGIETIATASNQIAAGNLDLSSRTEEQA 297 Query: 296 SSLEETASAMEELTSTVKQNADNARQANQLANSASEVAVQGGSVVSEVVATMGSINASSR 355 SSLEETAS+MEELTSTVKQNADNARQANQLA SAS VA +GG VVS+VV TM IN+S++ Sbjct: 298 SSLEETASSMEELTSTVKQNADNARQANQLAVSASGVAEKGGVVVSQVVDTMEDINSSAK 357 Query: 356 KIVDIIAVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAAKEIKE 415 KIVDII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR LAQRSA+AAKEIK Sbjct: 358 KIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSAAAAKEIKT 417 Query: 416 LIGDSVGKVEAGSKLVEQAGATMDEVVASVRRVTDIVAEISSASQEQSDGIEQVNQAINL 475 LIGDSV KV+ GSKLV +AG TM+EVV SV+RVTDI++EI +ASQEQS GIEQVNQAI Sbjct: 418 LIGDSVDKVDIGSKLVAEAGVTMEEVVNSVKRVTDIMSEIMAASQEQSAGIEQVNQAIGQ 477 Query: 476 MDEATQQNAALVEQAAAAARQMQEQAASLSETVSVFRLQG 515 MD+ TQQNAALVE+AAAAA + EQA L+E VSVF+L G Sbjct: 478 MDQVTQQNAALVEEAAAAAESLNEQAGKLAEAVSVFKLDG 517 >gi|134094299|ref|YP_001099374.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 575 Score = 466 bits (1198), Expect = e-132, Method: Compositional matrix adjust. Identities = 275/516 (53%), Positives = 371/516 (71%), Gaps = 5/516 (0%) Query: 1 MQMKNMTIGTRLGLGFATILALMAMITGIGVWRLQEVSKLNDAMVNDALVKERLVNTFYK 60 M++ NM IGTRLGLGF IL L+A + G+ RL+ ++ + +V+D+L ++ + Sbjct: 1 MRIANMKIGTRLGLGFGLILLLVAAMGATGIMRLENINGASRHLVDDSLSMQKSAQNWLL 60 Query: 61 SIEVNIGRIVAAAKNPDVEQQKFYKQQIMSVISKNNELVKRMDELFTDEAGRAALNAINE 120 VN R +A K D E Q+F+++ I + + E+ K +++ + + + + Sbjct: 61 GTSVNASRTLALVKASDPESQEFFQKAITAQSKQITEIQKSIEDRINSDKEKELFAEVAK 120 Query: 121 RRKSVLEANTEVFKEKDAGNEQAARKVVDEKLLPSTQLYIAAIEKLASMQAERIQILTAQ 180 +R + ++ + K GN A +++D K++P+ Y+ +++ + +++ Sbjct: 121 KRSAYIDIRKSILGVKAGGNIAEANQMIDTKMVPALDAYVDSVKNVLGHYENEVKLADES 180 Query: 181 IDDLFQTARKVMIGLGLVALLLGVILAWSITRSITAPLHKAVEVASRVAKGQL---DNCI 237 I D + + R +I ++A+LLG ++AW +T IT PLH+A++VA VA+G L + Sbjct: 181 ITDDYLSGRMALIIGAVIAILLGTLIAWRLTVGITRPLHEALKVAESVAEGDLTARSDMA 240 Query: 238 EVRGGDETGQLMLALKDMNEKLVGIVSRVRQGTDTIATASTEIASGNLDLSDRTEQQASS 297 E + DE G L+ AL M LV V+++R GTDTIATAS+EIASGNLDLS RTEQQASS Sbjct: 241 ETQ--DEPGLLLSALGRMQANLVRTVTQIRLGTDTIATASSEIASGNLDLSSRTEQQASS 298 Query: 298 LEETASAMEELTSTVKQNADNARQANQLANSASEVAVQGGSVVSEVVATMGSINASSRKI 357 LEETAS+MEELTSTVKQNADN+RQANQLA +AS VAV+GG+VVS+VV TMG+IN S++KI Sbjct: 299 LEETASSMEELTSTVKQNADNSRQANQLAVAASTVAVKGGAVVSQVVDTMGAINNSAKKI 358 Query: 358 VDIIAVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAAKEIKELI 417 VDII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR LAQRSA+AAKEIK LI Sbjct: 359 VDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRNLAQRSAAAAKEIKTLI 418 Query: 418 GDSVGKVEAGSKLVEQAGATMDEVVASVRRVTDIVAEISSASQEQSDGIEQVNQAINLMD 477 GDSV KV+AGSKLV +AG TMDE+V V+RV DI+AEI++ASQEQSDGIEQVNQA++ MD Sbjct: 419 GDSVEKVDAGSKLVAEAGTTMDEIVDGVKRVADIMAEITAASQEQSDGIEQVNQAVSQMD 478 Query: 478 EATQQNAALVEQAAAAARQMQEQAASLSETVSVFRL 513 + TQQNAALVE+AAAAA +Q+QA +L+E VSVFR+ Sbjct: 479 QVTQQNAALVEEAAAAAESLQDQARNLAEAVSVFRV 514 >gi|134093365|ref|YP_001098440.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 572 Score = 399 bits (1025), Expect = e-112, Method: Compositional matrix adjust. Identities = 233/329 (70%), Positives = 264/329 (80%) Query: 185 FQTARKVMIGLGLVALLLGVILAWSITRSITAPLHKAVEVASRVAKGQLDNCIEVRGGDE 244 F R + IG + +LL +A+ + R I PLH AV++A VA G L I V +E Sbjct: 184 FVMVRNISIGAIIFGVLLAGFMAFWLIRLIARPLHDAVQIARSVAAGDLTQQIHVNSTNE 243 Query: 245 TGQLMLALKDMNEKLVGIVSRVRQGTDTIATASTEIASGNLDLSDRTEQQASSLEETASA 304 TGQL+ ALKDMN+ L VS VR+GT+TI AS EIASGN DLS RTE QA SLEETAS+ Sbjct: 244 TGQLLQALKDMNDSLSKTVSAVRRGTETITVASGEIASGNADLSSRTEAQAGSLEETASS 303 Query: 305 MEELTSTVKQNADNARQANQLANSASEVAVQGGSVVSEVVATMGSINASSRKIVDIIAVI 364 MEELTSTV+QNADNARQANQL SA+EVAV+GGSVVSEVV TMGSI SSRKIVDII VI Sbjct: 304 MEELTSTVRQNADNARQANQLVVSATEVAVKGGSVVSEVVITMGSIKDSSRKIVDIIGVI 363 Query: 365 DGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAAKEIKELIGDSVGKV 424 D IAFQTNILALNAAVEAARAGEQGRGFAVVASEVR LAQRSA AAKEIK LI DSV KV Sbjct: 364 DSIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSAGAAKEIKALIDDSVHKV 423 Query: 425 EAGSKLVEQAGATMDEVVASVRRVTDIVAEISSASQEQSDGIEQVNQAINLMDEATQQNA 484 +AGSKLV+QAG+TM E+V SV+ V DI++EI+SASQEQSDGIEQVNQAI+ MDE TQQNA Sbjct: 424 DAGSKLVDQAGSTMQEIVTSVKHVADIMSEITSASQEQSDGIEQVNQAISQMDEMTQQNA 483 Query: 485 ALVEQAAAAARQMQEQAASLSETVSVFRL 513 ALVEQAAAAA+ MQ+QA LS V++F+L Sbjct: 484 ALVEQAAAAAQSMQDQAVELSGAVAIFKL 512 >gi|134093903|ref|YP_001098978.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 554 Score = 394 bits (1013), Expect = e-111, Method: Compositional matrix adjust. Identities = 256/517 (49%), Positives = 343/517 (66%), Gaps = 6/517 (1%) Query: 3 MKNMTIGTRLGLGFATILALMAMITG-IGVWRLQEVSK-LNDAMVNDALVKERLVNTFYK 60 +KN++I RL L + +M ++ G +G+ +Q + L + VN E + + + Sbjct: 2 LKNISIKFRLLLTM-VFMGMMLIVGGAMGILGVQTTNNTLQNIYVNQMPSSEAIHSMMTR 60 Query: 61 SIEVNIGRIVAAAKNPDVEQQKFYKQQIMSVISKNNELVKRMD-ELFTDEAGRAALNAIN 119 ++ G + A + + ++ K+ + E K + + T E + A Sbjct: 61 LLQARAGLNLVAMRPHEEGSERILKRAENFYLQSEEEWKKYLSLPIETLEERKVADEVTA 120 Query: 120 ERRKSVLEANTEVFKEKDAGNEQAARKVVDEKLLPSTQLYIAAIEKLASMQAERIQILTA 179 +R + + EA + AG + ++ K+ P Q + ++L +Q + Sbjct: 121 KRIRYLKEAEQGLIAALRAGRNEEVEDILVNKMPPLFQSLTKSTDELVELQMKSAATGYQ 180 Query: 180 QIDDLFQTARKVMIGLGLVALLLGV-ILAWSITRSITAPLHKAVEVASRVAKGQLDNCIE 238 LF R + + +G++ L+GV I A+ + R+IT PL + + +A G L + IE Sbjct: 181 DSQTLFHYFRIIAV-VGVLLGLIGVAIYAFFLIRAITGPLKEMLLHFDTIASGDLTSNIE 239 Query: 239 VRGGDETGQLMLALKDMNEKLVGIVSRVRQGTDTIATASTEIASGNLDLSDRTEQQASSL 298 V+ +E G LML L+ M ++L V++VR+G+ I+TA+TEIA+GNLDLS RTEQQA+SL Sbjct: 240 VKSRNEMGTLMLGLQKMQKRLTDTVAQVREGSMAISTATTEIAAGNLDLSSRTEQQAASL 299 Query: 299 EETASAMEELTSTVKQNADNARQANQLANSASEVAVQGGSVVSEVVATMGSINASSRKIV 358 EETAS+MEELTSTVKQN DNARQANQLA SAS VAV+GG+VVS+VV TM +IN S+RKIV Sbjct: 300 EETASSMEELTSTVKQNTDNARQANQLATSASAVAVKGGAVVSDVVNTMDAINTSARKIV 359 Query: 359 DIIAVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAAKEIKELIG 418 DII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSA+AAKEIK LI Sbjct: 360 DIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKHLID 419 Query: 419 DSVGKVEAGSKLVEQAGATMDEVVASVRRVTDIVAEISSASQEQSDGIEQVNQAINLMDE 478 DSV KV+AG++LV +AG TM EVV SV+RVTDI++EI +ASQEQS GIEQVN AI MDE Sbjct: 420 DSVNKVDAGTRLVAEAGTTMTEVVDSVKRVTDIMSEILAASQEQSAGIEQVNTAIVQMDE 479 Query: 479 ATQQNAALVEQAAAAARQMQEQAASLSETVSVFRLQG 515 TQQNAALVEQAAAAA +++QA +LS VSVF+LQG Sbjct: 480 VTQQNAALVEQAAAAASSLRDQATNLSTVVSVFKLQG 516 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.313 0.125 0.318 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 634,038 Number of extensions: 20672 Number of successful extensions: 195 Number of sequences better than 1.0e-08: 15 Number of HSP's gapped: 133 Number of HSP's successfully gapped: 15 Length of query: 515 Length of database: 1,000,347 Length adjustment: 86 Effective length of query: 429 Effective length of database: 716,977 Effective search space: 307583133 Effective search space used: 307583133 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 131 (55.1 bits)