BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1720.p
         (499 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095905|ref|YP_001100980.1| deoxyribodipyrimidine photolyas...   640   0.0  

>gi|134095905|ref|YP_001100980.1| deoxyribodipyrimidine photolyase
           [Herminiimonas arsenicoxydans]
          Length = 493

 Score =  640 bits (1650), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 325/492 (66%), Positives = 367/492 (74%), Gaps = 5/492 (1%)

Query: 1   MPQFDKSLVWFRRDLRTNDHAALYHALRQSRQVWCVFVFDTDILDALKAEGVQQDRRIDF 60
           M +F+K+LVWFRRDLR+ DHAAL+HAL QSRQV+CVF+FD  ILDAL     + DRR++F
Sbjct: 1   MLRFEKTLVWFRRDLRSVDHAALHHALAQSRQVYCVFIFDRAILDALP----RADRRVEF 56

Query: 61  LLASVAELDGTLRQAGGGLIVLHGSALRQIPELAAKLQAQAVFINTDYEPLAIERDAAVA 120
           + AS+ EL   LR  GGGLIV H  A   IPELA +L   AVF N DYEP AI RDA VA
Sbjct: 57  IHASLLELAQALRALGGGLIVQHAWAETAIPELAIELGVDAVFANHDYEPQAITRDAHVA 116

Query: 121 RSLQRQGAQMLSYKDQVIFEKDEVLTQSAKPFSVFTPYKNAWMAKLTAADGAFYLKPYPV 180
            +LQ  G  + ++KDQV+FEK+EVLTQ+ KPFSVFTPYKNAW+ KL A      L+PY +
Sbjct: 117 AALQAAGRSLHTFKDQVVFEKNEVLTQAEKPFSVFTPYKNAWLKKLYAESNEATLRPYEI 176

Query: 181 ENYLKALAAPPGEVDHALPSHAQLGFAPSNLHELKISTGMSGAQALLSDFLGRIGAYGTA 240
           + Y       P E    +PS   LGF  +NL +L I TGM GAQ LL  F  R+  Y   
Sbjct: 177 DAYADRFVNLP-ESKFPIPSLTDLGFEKTNLPDLNIPTGMQGAQDLLDAFADRMQRYDQT 235

Query: 241 RDFPAVKGPSYLSVHLRFGTVSIRALAGAALYLMQNNQGAAGAAVWLSELIWRDFYFMIL 300
           RDFPA+KGPSYLSVH+RFGTVSIRALA  AL  M+   G  GAAVWLSEL+WRDFYFMIL
Sbjct: 236 RDFPALKGPSYLSVHVRFGTVSIRALARRALDAMRTGTGGNGAAVWLSELVWRDFYFMIL 295

Query: 301 HHHPRVTEQAFKPEYGAIQWEQGPQAEALFAAWCEGRTGYPLVDAAMAQINQSGYMHNRL 360
             HP V + AFK +Y AI WE G  A  LF AWC+G+TGYPLVDAAMAQ+NQ+GYMHNRL
Sbjct: 296 FQHPHVVDHAFKADYDAITWESGDHARRLFQAWCDGQTGYPLVDAAMAQLNQTGYMHNRL 355

Query: 361 RMVVASFLTKDLGIDWRWGEQYFARHLNDFDLAANNGGWQWASSSGCDAQPYFRIFNPVT 420
           RMV ASFL KDLGIDWRWGE YFA  LNDFDLAANNGGWQWASSSGCDAQPYFRIFNP+T
Sbjct: 356 RMVTASFLIKDLGIDWRWGEHYFAEKLNDFDLAANNGGWQWASSSGCDAQPYFRIFNPIT 415

Query: 421 QSEKFDPQGKFIRRYLPQLAKLSDKRIHAPWSATPEERLAAGVVLGQNYPRPIVDHALAR 480
           QSEKFD QGKFIRRYLPQLAKLSD+ IHAPW A   E   AGV +G NYP P+V H  AR
Sbjct: 416 QSEKFDQQGKFIRRYLPQLAKLSDRHIHAPWCAPALELRMAGVEIGNNYPGPLVQHDEAR 475

Query: 481 ERTLQRYAVVKK 492
            RTLQRYAVVKK
Sbjct: 476 ARTLQRYAVVKK 487


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.322    0.135    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 1,005,221
Number of extensions: 42590
Number of successful extensions: 110
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 108
Number of HSP's successfully gapped: 1
Length of query: 499
Length of database: 1,000,347
Length adjustment: 86
Effective length of query: 413
Effective length of database: 716,977
Effective search space: 296111501
Effective search space used: 296111501
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)