BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1712.p
         (153 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093588|ref|YP_001098663.1| MarR family transcriptional reg...    57   5e-10

>gi|134093588|ref|YP_001098663.1| MarR family transcriptional
           regulator (partial) [Herminiimonas arsenicoxydans]
          Length = 149

 Score = 56.6 bits (135), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 47/74 (63%), Gaps = 1/74 (1%)

Query: 37  LRN-LGITYSQYLVLMVLWEQDQLTVSDIGERLVLDSATLTPLLKRMEAQGLVSRERAAS 95
           +RN  G+T SQ+ ++  L   + +T  D+GER ++   TLT ++ R+E +GLV+R    +
Sbjct: 27  IRNRTGLTPSQFDIVATLGNTEGMTFKDLGERTLITKGTLTGVIDRLEEKGLVTRVTHPA 86

Query: 96  DERQVVISLTAEGD 109
           D R  ++ LTA+G+
Sbjct: 87  DRRSTLVRLTAKGE 100


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.316    0.128    0.336 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 226,235
Number of extensions: 7225
Number of successful extensions: 46
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 46
Number of HSP's successfully gapped: 1
Length of query: 153
Length of database: 1,000,347
Length adjustment: 74
Effective length of query: 79
Effective length of database: 756,517
Effective search space: 59764843
Effective search space used: 59764843
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 125 (52.8 bits)