BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1711.p
         (499 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096447|ref|YP_001101522.1| putative dipeptide transport bi...   130   1e-31
gi|134095504|ref|YP_001100579.1| oligopeptide ABC transporter pe...    55   6e-09

>gi|134096447|ref|YP_001101522.1| putative dipeptide transport
           binding transmembrane protein [Herminiimonas
           arsenicoxydans]
          Length = 528

 Score =  130 bits (328), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 131/510 (25%), Positives = 210/510 (41%), Gaps = 33/510 (6%)

Query: 2   KQRVSRFLLCAMSSTVLAACSLPTLAVTLNISLDADPGKLDPTQSSMLNERILYQSIFDK 61
           ++++S   L    +      S    A  L I L AD   LDP   ++         IFD 
Sbjct: 6   REKLSALALMGALAWSGNLASHAAFAADLKIGLSADVSSLDPHYLNIAPNVTFSSHIFDA 65

Query: 62  LVDLDGEGKIVPMLAERWTVSDDQKTYTLYLRKGVKFQDGTPFDAKAVEFNLLRGQEKTS 121
           LV++D  GK+VP LA  W    D  T+   LR+ VKF DG+PF A  V F+L R  + TS
Sbjct: 66  LVNVDANGKLVPGLATSWRAV-DATTWEFKLRRDVKFHDGSPFTADDVIFSLDRPAKLTS 124

Query: 122 LRRNELKYVSKIT---VVDDHTIKLDLSTPFAPFLSILTDRAGMMSSPTAVKKYGEDYVN 178
                  Y  +I    +VD +T++L  + P+ P L++      ++S   A K   +D+ N
Sbjct: 125 SPGPFTAYTKQIVAKKIVDPYTVRLMTAAPYGP-LALDMSTVFIVSKKAAEKASTDDFNN 183

Query: 179 HP--VGTGPFIYEGRLKGATLTLKKNPDYWRAGLPKVDEVVYKIMPDVNVAFNNLRSGQV 236
               +GTGP+ +    +G  + + +N  YW  G    D+V ++I+ +       L SG V
Sbjct: 184 GKALIGTGPYKFLSFKRGDRIEVTRNDQYW-GGKSDWDKVTFRIITNSAPRLAALLSGDV 242

Query: 237 DISNRFPYKEITNVPANANYTVLNKPSLGFRGFYLNTT------------KP----PFDK 280
           D     P  +++ + +NA ++   K S     + L+ +            KP    P   
Sbjct: 243 DAIEGVPTADLSRLKSNAKFSFAQKISWRTIFWELDQSPGASRYVTDKSGKPLPNNPLHD 302

Query: 281 KEVREAVDILIDRNAIAKVVYNNAVAPGHSPFSKAQFANGPGDVPPKVDVARAKALLKAA 340
             VR+A+   I+R A+ +        P  +  S   F           D   AK LL  A
Sbjct: 303 VRVRQAMSKAINRQALVERTMEGLAVPASNIVSPGIFGYNDALKVEVYDPEGAKKLLAQA 362

Query: 341 GKEGGFSFKLTLPTT--ADELQAGQMIQGMLRPAGITVTLEKTEIASQVEAGKTGAFEGL 398
           G   GF+  +  P     ++ Q  Q +       GI   +    ++      + G F   
Sbjct: 363 GYPHGFALTIHGPNDRYINDEQVVQTVAQFWNRIGIQTKVATLPLSVYFAKARAGEFSVS 422

Query: 399 FLGWSGRPDPDQNIFDFVNS------GGSMNYSHIAAKEVDDLLQQARVEGDQAKRKVLY 452
            LGW G    D  +   V +       GS N+   +   VD L+  +    DQ KR    
Sbjct: 423 LLGW-GTLAGDFGLRTLVGTPNVETGWGSWNWGKYSNPAVDKLIASSLSSVDQGKRVAFA 481

Query: 453 DQAMAILVKEVPYIYLVHDNVLFGIAKSVK 482
            +A A+ +K+   + L H    + + K +K
Sbjct: 482 KEAAALALKDYAVVPLHHQYATWAMRKGLK 511


>gi|134095504|ref|YP_001100579.1| oligopeptide ABC transporter
           periplasmic substrate-binding protein [Herminiimonas
           arsenicoxydans]
          Length = 599

 Score = 55.5 bits (132), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 59/319 (18%), Positives = 125/319 (39%), Gaps = 43/319 (13%)

Query: 74  MLAERWTVSDDQKTYTLYLRKGVKFQDGTPFDAKAVEFNLLRGQEKTSLR-RNELKYVSK 132
           +LA+   ++ D+ + T  L    +F +G P  A  V+++      K + + ++    V +
Sbjct: 103 LLADDMVLAPDRMSMTFRLNPRARFNNGDPVLAADVKYSFDTLIAKGAPQFKSIFAEVKQ 162

Query: 133 ITVVDDHTIKLDLSTPFAPFLSILTDRAGMMSSPTAVKKYGEDYVNHPVGTGPFIYEGRL 192
             V+++ T++ D  +       I+           A   + +  +  P+ TGP++ +   
Sbjct: 163 CVVLNERTVRFDFKSLNHELPLIVGGVPVFSRKWAAGTDFDQIQLTPPIATGPYLIDRYD 222

Query: 193 KGATLTLKKNPDYW------RAGLPKVDEVVYKIMPDVNVAFNNLRSGQVDISNRFPYKE 246
            G  ++ K NP YW      R G+     + Y+   D        ++G+ D+   +  K 
Sbjct: 223 SGRAISYKLNPGYWGTDIPSRKGMFNFGRINYRFYKDDVARLEAFKAGEFDLVVEYSAKN 282

Query: 247 ITNVPANANYT--------VLNKPSLGFRGFYLNTTKPPFDKKEVREAVDILIDRNAIAK 298
                    ++        + +    G +GF +N  +P F    VR A+D+ +D   + +
Sbjct: 283 WARSYKGPKFSSGEIIKRELTHSNGAGMQGFVMNLRRPQFQDVRVRRALDLALDFEWMNR 342

Query: 299 VVYNNAVAPGHSPFSKAQFAN------------------------GPGDVPPKVDVARA- 333
            ++  +    +S F+ +  A                         GP  VPP  D  R+ 
Sbjct: 343 QLFFGSYKRIYSFFNNSPMAATSLPSADELALLEPLRSKLDPVVFGPAPVPPSTDPPRSL 402

Query: 334 -KALLKAAG--KEGGFSFK 349
              LL+A    ++ G++++
Sbjct: 403 RGNLLEAVELFRQAGWTYR 421


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.318    0.135    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 925,155
Number of extensions: 38129
Number of successful extensions: 101
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 98
Number of HSP's successfully gapped: 2
Length of query: 499
Length of database: 1,000,347
Length adjustment: 86
Effective length of query: 413
Effective length of database: 716,977
Effective search space: 296111501
Effective search space used: 296111501
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)