BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1710.p
         (312 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096446|ref|YP_001101521.1| peptide ABC transporter membran...   191   5e-50
gi|134095503|ref|YP_001100578.1| oligopeptide ABC transporter me...   129   1e-31

>gi|134096446|ref|YP_001101521.1| peptide ABC transporter membrane
           protein [Herminiimonas arsenicoxydans]
          Length = 307

 Score =  191 bits (484), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 102/288 (35%), Positives = 171/288 (59%), Gaps = 8/288 (2%)

Query: 31  GDPVAAILGMEATPEAAAALRLKLGLDDPLLVQYGRWLWAVLHGDLGRSFIDNTPVAEAL 90
           G+P+  ++  +A     A      GLD PL  QY  ++   L GDLGRSF   TP    +
Sbjct: 13  GNPIDMLISPDADQLERARTIAAFGLDKPLWQQYFIFIQQALSGDLGRSFSFGTPALALI 72

Query: 91  WQRLPVTIELAIGSFLVAVIIAVPAGILSAARPRGWANAIGTLIALFGMSVPHFWLGMLF 150
            +RLP T+ELAIG+ L+A+++ +P G+ +  RP  W+      I++ G S+P FW+G++ 
Sbjct: 73  LERLPATLELAIGAILIAIVLGIPLGLWAGLRPHSWSGKSIMAISILGFSLPTFWVGLML 132

Query: 151 IILFAVKLGWLPASGF--------VPLSVDWHANLIAMVMPMVVTGLRESAILMRMVRSS 202
           I++FAV+LGWLP+ G         VP+S      L  +++P     L   A+++R+ R+ 
Sbjct: 133 IMVFAVQLGWLPSGGRGETSLLFGVPVSFLTLDGLQHLLLPAFNLALFNIALVIRLTRAG 192

Query: 203 LLEVLNEDYIRTAFSKGLRDWQVVLGHALRNAMIPVVTASGLMVSGMLGGLVITESIFGI 262
             E L +DY++ A +KG+R+ +++  H L+N +IP+VT   L    ++   ++TES+F  
Sbjct: 193 AQEALLQDYVKFARAKGVRNSRIIGVHVLKNILIPIVTVIALQFGSIIAFAIVTESVFAW 252

Query: 263 PGMGKMIVDAIFQRDYVTVQAGVLAATVMVVIVNLCVDLLYSVIDPRI 310
           PGMGK+I+D+I   D   + A ++    + +++NL VD+ YS++DPR+
Sbjct: 253 PGMGKLIIDSIRVLDRPVIVAYLMLVVALFILINLIVDVAYSLLDPRV 300


>gi|134095503|ref|YP_001100578.1| oligopeptide ABC transporter
           membrane protein [Herminiimonas arsenicoxydans]
          Length = 339

 Score =  129 bits (325), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 94/339 (27%), Positives = 163/339 (48%), Gaps = 48/339 (14%)

Query: 12  LPTLLLVSMVVFSLLAVLPGDPVAAIL------------------------GMEATPEAA 47
           LPTLL V  + F+++  +PG PV   L                        G++A  E  
Sbjct: 2   LPTLLGVVAITFAVIQFVPGGPVEQALMELKGQVGAGEATGGGASQYRGRQGIDA--ERV 59

Query: 48  AALRLKLGLDDPLLVQYGRWLWAVLHG----DLGRSFIDNTPVAEALWQRLPVTIELAIG 103
           A ++   G D P   ++    W +L G    DLG+SF  +  V + +  +LPV+I L + 
Sbjct: 60  AEIKALYGFDKPASERF----WQMLKGFATFDLGKSFYHHKDVWDLVVSKLPVSITLGLW 115

Query: 104 SFLVAVIIAVPAGILSAARPRGWANAIGTLIALFGMSVPHFWLGMLFIILF--AVKLGWL 161
           +F +   I+VP GI  A R     +AI +++ L G S+P F LG+  +++F     + W 
Sbjct: 116 TFFLTYFISVPLGIAKAVREGSRFDAITSMMVLVGYSIPGFILGVFLLVMFGGGSFVQWF 175

Query: 162 PASGFVPLSVDWHA---------NLIAMVMPMVVTGLRESAILMRMVRSSLLEVLNEDYI 212
           P  G    S DW            L  + +P+  +     A++  + +++ L+ + + Y+
Sbjct: 176 PLRGLT--SDDWEQLSLLGKVLDYLWHITLPVTASVAGSFAVMTMLTKNTFLDEIRKQYV 233

Query: 213 RTAFSKGLRDWQVVLGHALRNAMIPVVTA-SGLMVSGMLGGLVITESIFGIPGMGKMIVD 271
            TA +KGL +  V+  H  RNA+IP+VT      +     G ++ E++F + G+G +  +
Sbjct: 234 LTARAKGLSENAVLYKHVFRNALIPLVTGFPAAFIGAFFAGSLLIETLFSLDGLGLLSYE 293

Query: 272 AIFQRDYVTVQAGVLAATVMVVIVNLCVDLLYSVIDPRI 310
           ++ +RDY  V   +   T++ ++V L  DL Y   DPR+
Sbjct: 294 SVIRRDYPVVMGTLYLFTLIGLVVKLLGDLCYVWADPRL 332


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.328    0.142    0.430 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 505,247
Number of extensions: 19160
Number of successful extensions: 104
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 101
Number of HSP's successfully gapped: 2
Length of query: 312
Length of database: 1,000,347
Length adjustment: 82
Effective length of query: 230
Effective length of database: 730,157
Effective search space: 167936110
Effective search space used: 167936110
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 128 (53.9 bits)